Wall clock time and date at job start Mon Mar 30 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38213 * 120.07422 * 2 1 4 4 C 1.38306 * 120.09101 * 179.97438 * 3 2 1 5 5 C 1.38267 * 120.33802 * 0.08901 * 4 3 2 6 6 C 1.38632 * 120.06583 * 0.26587 * 5 4 3 7 7 C 1.38783 * 120.06788 * 180.02562 * 2 1 3 8 8 N 1.39813 * 120.10015 * 359.77812 * 7 2 1 9 9 C 1.36814 * 121.12243 * 346.23370 * 8 7 2 10 10 H 1.07999 * 119.99993 * 307.77428 * 9 8 7 11 11 C 1.38766 * 120.00006 * 127.77058 * 9 8 7 12 12 N 1.31611 * 120.00164 * 172.57281 * 11 9 8 13 13 Si 1.86808 * 119.99965 * 352.57522 * 11 9 8 14 14 H 1.48489 * 109.47319 * 86.69601 * 13 11 9 15 15 H 1.48503 * 109.46837 * 206.69450 * 13 11 9 16 16 H 1.48502 * 109.46845 * 326.69025 * 13 11 9 17 17 C 1.47276 * 117.75076 * 166.20788 * 8 7 2 18 18 C 1.53526 * 107.61928 * 42.07574 * 17 8 7 19 19 O 1.35872 * 119.68352 * 179.97438 * 6 5 4 20 20 H 1.08996 * 109.47193 * 116.10583 * 1 2 3 21 21 H 1.08996 * 109.46830 * 236.10869 * 1 2 3 22 22 H 1.09000 * 109.46712 * 356.10523 * 1 2 3 23 23 H 1.08001 * 119.95120 * 359.96861 * 3 2 1 24 24 H 1.07999 * 119.82792 * 180.02562 * 4 3 2 25 25 H 1.08008 * 119.96780 * 179.97438 * 5 4 3 26 26 H 0.97001 * 119.99953 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.82817 * 161.60009 * 17 8 7 28 28 H 1.09002 * 109.83081 * 282.47706 * 17 8 7 29 29 H 1.09005 * 109.58736 * 61.64244 * 18 17 8 30 30 H 1.08995 * 109.58956 * 181.92818 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1961 0.0000 4 6 3.5827 1.1965 0.0005 5 6 4.2815 0.0034 -0.0008 6 6 3.5972 -1.2023 -0.0082 7 6 2.2024 -1.2011 -0.0005 8 7 1.5069 -2.4139 0.0036 9 6 0.1692 -2.4611 0.2869 10 1 -0.2090 -1.9975 1.1860 11 6 -0.7016 -3.1045 -0.5811 12 7 -1.9610 -3.2782 -0.2409 13 14 -0.0861 -3.7242 -2.2324 14 1 0.4774 -5.0884 -2.0704 15 1 -1.2143 -3.7660 -3.1972 16 1 0.9677 -2.8106 -2.7424 17 6 2.2628 -3.6390 -0.3078 18 6 3.6110 -3.5511 0.4212 19 8 4.2916 -2.3701 -0.0100 20 1 -0.3633 -0.4522 -0.9228 21 1 -0.3633 -0.5730 0.8530 22 1 -0.3633 1.0253 0.0698 23 1 1.6601 2.1316 -0.0005 24 1 4.1196 2.1335 0.0010 25 1 5.3615 0.0106 -0.0008 26 1 -2.5696 -3.7282 -0.8475 27 1 1.7108 -4.5124 0.0397 28 1 2.4266 -3.7091 -1.3832 29 1 3.4423 -3.5027 1.4970 30 1 4.2123 -4.4289 0.1847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527427877.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:07 Heat of formation + Delta-G solvation = -4.596405 kcal Electronic energy + Delta-G solvation = -15233.008626 eV Core-core repulsion = 12800.486019 eV Total energy + Delta-G solvation = -2432.522608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58306 -38.43460 -37.43464 -34.12423 -32.80062 -31.69722 -29.38245 -27.80340 -25.31939 -25.01985 -22.13701 -21.42541 -19.54099 -18.45205 -17.51650 -17.44897 -16.52145 -16.04222 -15.53460 -15.18572 -14.67320 -14.58543 -14.47923 -14.07079 -13.69745 -13.18091 -13.07294 -12.83165 -12.65621 -12.38269 -12.17768 -11.84205 -11.61447 -11.28249 -10.79566 -10.50871 -9.02357 -8.46790 -8.01004 -6.06585 0.66049 0.81710 1.17782 1.28802 1.36699 2.19207 2.42972 2.83544 2.86211 3.15123 3.82444 4.04225 4.07742 4.27975 4.33584 4.52924 4.61372 4.68794 4.72883 4.85636 4.98072 5.11462 5.19899 5.47521 5.55682 5.65742 5.80879 5.94108 6.03814 6.24607 6.50554 6.80373 7.21295 7.62899 8.69359 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.014298 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.709556 B = 1957.816178 C = 2544.445546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.158 4.158 5 C -0.115 4.115 6 C 0.006 3.994 7 C 0.123 3.877 8 N -0.515 5.515 9 C -0.287 4.287 10 H 0.070 0.930 11 C 0.023 3.977 12 N -0.916 5.916 13 Si 0.929 3.071 14 H -0.254 1.254 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.063 3.937 18 C 0.054 3.946 19 O -0.327 6.327 20 H 0.033 0.967 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.138 0.862 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.275 0.725 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 3.054 -0.643 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C -0.129 4.129 4 C -0.178 4.178 5 C -0.134 4.134 6 C -0.042 4.042 7 C 0.018 3.982 8 N -0.217 5.217 9 C -0.416 4.416 10 H 0.088 0.912 11 C -0.179 4.179 12 N -0.555 5.555 13 Si 0.755 3.245 14 H -0.178 1.178 15 H -0.217 1.217 16 H -0.204 1.204 17 C -0.061 4.061 18 C -0.022 4.022 19 O -0.242 6.242 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.156 0.844 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.892 2.725 -0.732 10.286 hybrid contribution -0.686 -0.718 -0.716 1.224 sum 9.206 2.007 -1.448 9.533 Atomic orbital electron populations 1.20745 0.91114 0.99457 1.01890 1.19595 0.96439 0.91763 1.07407 1.21028 0.94737 0.96335 1.00834 1.20892 0.93470 0.97594 1.05863 1.20546 1.00310 0.89182 1.03379 1.18770 0.88287 0.87164 1.10019 1.18634 0.90651 0.88417 1.00469 1.42495 1.06710 1.01307 1.71173 1.18596 0.80702 1.36779 1.05474 0.91248 1.26096 0.94725 0.97270 0.99801 1.69815 1.04882 1.42655 1.38117 0.86020 0.77581 0.79715 0.81142 1.17847 1.21678 1.20425 1.22663 0.94323 0.90303 0.98796 1.23308 0.93268 0.87379 0.98270 1.85860 1.40015 1.14839 1.83499 0.94804 0.91581 0.92734 0.84421 0.82909 0.83967 0.91570 0.88910 0.93620 0.92054 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.40 8.21 71.24 0.58 -2.82 16 2 C -0.15 -6.41 5.88 -19.74 -0.12 -6.53 16 3 C -0.11 -3.90 9.67 22.28 0.22 -3.68 16 4 C -0.16 -4.93 10.03 22.29 0.22 -4.70 16 5 C -0.12 -3.95 9.97 22.37 0.22 -3.73 16 6 C 0.01 0.25 6.52 22.66 0.15 0.40 16 7 C 0.12 5.68 6.34 38.30 0.24 5.92 16 8 N -0.51 -24.95 2.38 -508.51 -1.21 -26.16 16 9 C -0.29 -15.43 6.38 84.04 0.54 -14.89 16 10 H 0.07 4.11 5.99 -2.91 -0.02 4.09 16 11 C 0.02 1.24 5.10 84.85 0.43 1.67 16 12 N -0.92 -52.36 13.97 21.64 0.30 -52.05 16 13 Si 0.93 43.73 24.98 68.60 1.71 45.44 16 14 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.28 -13.68 6.95 99.48 0.69 -12.99 16 17 C 0.06 2.58 4.61 86.41 0.40 2.98 16 18 C 0.05 1.82 7.19 72.16 0.52 2.34 16 19 O -0.33 -12.54 10.32 -92.12 -0.95 -13.49 16 20 H 0.03 1.67 7.22 -2.39 -0.02 1.65 16 21 H 0.07 3.30 4.98 -2.39 -0.01 3.29 16 22 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 23 H 0.14 4.01 7.95 -2.91 -0.02 3.98 16 24 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 25 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 26 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.09 3.70 7.66 -2.38 -0.02 3.68 16 28 H 0.05 1.91 6.27 -2.39 -0.01 1.89 16 29 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -62.03 241.37 4.39 -57.64 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.13 Total: 11.66 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.41 Total: -23.04 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -0.91 Total: -78.21 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.95 Total: -13.49 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.71 Total: 45.44 kcal Total: -62.03 4.39 -57.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527427877.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.039 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds