Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99995 * 2 1 4 4 H 1.48503 * 109.46946 * 239.99453 * 3 2 1 5 5 H 1.48496 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47314 * 119.99696 * 3 2 1 7 7 C 1.37876 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00653 * 185.53699 * 7 2 1 9 9 C 1.50708 * 119.99501 * 5.53592 * 7 2 1 10 10 H 1.08992 * 109.16512 * 334.45452 * 9 7 2 11 11 C 1.52660 * 109.16834 * 93.67583 * 9 7 2 12 12 C 1.53488 * 108.09386 * 173.43089 * 11 9 7 13 13 C 1.52831 * 107.83327 * 291.65606 * 12 11 9 14 14 C 1.50809 * 110.40028 * 50.94988 * 13 12 11 15 15 C 1.36106 * 117.19110 * 159.35025 * 14 13 12 16 16 C 1.39840 * 120.70012 * 175.81709 * 15 14 13 17 17 C 1.36418 * 118.95360 * 0.09210 * 16 15 14 18 18 C 1.40177 * 119.01961 * 0.49622 * 17 16 15 19 19 O 1.22061 * 119.60277 * 181.78877 * 18 17 16 20 20 N 1.35397 * 122.57897 * 338.08863 * 14 13 12 21 21 H 0.96998 * 120.00137 * 5.01954 * 1 2 3 22 22 H 1.09004 * 109.73634 * 293.07901 * 11 9 7 23 23 H 1.08998 * 109.73975 * 53.73272 * 11 9 7 24 24 H 1.09001 * 109.78646 * 51.24632 * 12 11 9 25 25 H 1.09000 * 109.78883 * 172.01645 * 12 11 9 26 26 H 1.09007 * 109.31821 * 171.23217 * 13 12 11 27 27 H 1.08993 * 109.32001 * 290.66684 * 13 12 11 28 28 H 1.08003 * 119.64567 * 356.08266 * 15 14 13 29 29 H 1.07997 * 120.51760 * 179.86024 * 16 15 14 30 30 H 1.07997 * 120.48675 * 180.76872 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0808 -1.1962 0.0908 9 6 1.2563 -2.4962 -0.1248 10 1 0.2390 -2.3610 0.2423 11 6 1.2075 -2.9068 -1.5943 12 6 0.5895 -4.3093 -1.6771 13 6 1.5791 -5.2943 -1.0555 14 6 2.0130 -4.8143 0.3067 15 6 2.5292 -5.7426 1.1578 16 6 3.0347 -5.3642 2.4056 17 6 3.0012 -4.0473 2.7599 18 6 2.4521 -3.1166 1.8671 19 8 2.4465 -1.9315 2.1592 20 7 1.9280 -3.5167 0.6837 21 1 -0.4850 0.8368 -0.0735 22 1 0.5939 -2.2006 -2.1537 23 1 2.2168 -2.9237 -2.0056 24 1 -0.3499 -4.3318 -1.1247 25 1 0.4107 -4.5729 -2.7195 26 1 1.1038 -6.2706 -0.9593 27 1 2.4525 -5.3837 -1.7013 28 1 2.5526 -6.7818 0.8646 29 1 3.4415 -6.1035 3.0795 30 1 3.3961 -3.7260 3.7124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584634486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -4.189233 kcal Electronic energy + Delta-G solvation = -15134.931223 eV Core-core repulsion = 12702.426272 eV Total energy + Delta-G solvation = -2432.504951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62911 -36.61790 -35.37154 -32.79454 -32.03712 -30.21732 -27.67581 -25.13800 -22.96932 -22.88886 -21.50230 -19.21973 -16.88632 -16.17518 -16.03426 -15.25810 -14.56848 -14.44397 -13.94628 -13.66850 -13.26357 -12.81106 -12.43264 -11.94367 -11.75395 -11.46318 -11.10478 -10.86819 -10.75303 -10.38980 -10.30587 -10.16558 -9.98417 -9.42341 -9.03718 -8.61335 -8.19625 -6.89482 -6.00986 -3.91372 1.61538 2.69296 3.38038 3.42580 3.50449 3.77029 4.51097 4.61094 4.89032 5.18348 5.30900 5.42827 5.50221 5.66349 5.82125 5.89073 6.01945 6.09513 6.16739 6.26124 6.60807 6.69118 6.78734 6.85147 6.93660 7.07621 7.39493 7.60151 7.86011 7.99265 8.35817 8.95438 9.30860 9.60381 11.08620 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.012354 C = 0.009567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.778231 B = 2265.920104 C = 2926.015741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.472 4.472 8 H 0.058 0.942 9 C 0.228 3.772 10 H 0.079 0.921 11 C -0.115 4.115 12 C -0.132 4.132 13 C -0.084 4.084 14 C 0.190 3.810 15 C -0.289 4.289 16 C -0.023 4.023 17 C -0.271 4.271 18 C 0.499 3.501 19 O -0.501 6.501 20 N -0.470 5.470 21 H 0.263 0.737 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -11.564 -2.216 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.130 3.870 10 H 0.097 0.903 11 C -0.154 4.154 12 C -0.170 4.170 13 C -0.121 4.121 14 C 0.074 3.926 15 C -0.313 4.313 16 C -0.044 4.044 17 C -0.294 4.294 18 C 0.298 3.702 19 O -0.378 6.378 20 N -0.178 5.178 21 H 0.072 0.928 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.067 -10.547 -1.988 10.930 hybrid contribution 0.496 0.671 0.144 0.847 sum 2.564 -9.876 -1.844 10.369 Atomic orbital electron populations 1.69849 1.05903 1.27363 1.50997 1.24723 0.94790 0.99209 0.94664 0.86475 0.79476 0.82400 0.78627 1.20453 1.21397 1.19958 1.20771 0.93373 0.88819 1.48095 0.92414 1.19636 0.95744 0.84856 0.86803 0.90298 1.21993 1.00379 0.94209 0.98808 1.21815 0.98419 0.96451 1.00298 1.20789 1.00358 0.99509 0.91492 1.20619 0.92102 0.84586 0.95333 1.20228 1.15291 0.98807 0.96958 1.21058 0.92865 0.95690 0.94822 1.22098 1.11083 0.93802 1.02401 1.17146 0.81371 0.89992 0.81683 1.91063 1.56464 1.16706 1.73617 1.46427 1.44503 1.07140 1.19690 0.92758 0.90162 0.92508 0.91633 0.91638 0.89710 0.89515 0.85590 0.86382 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 12.76 55.43 0.71 -25.87 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.90 22.91 29.54 -169.99 -5.02 17.89 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.47 -13.46 5.46 -34.44 -0.19 -13.65 16 8 H 0.06 1.73 7.37 -52.49 -0.39 1.34 16 9 C 0.23 5.69 2.73 -69.25 -0.19 5.50 16 10 H 0.08 2.22 7.23 -51.93 -0.38 1.85 16 11 C -0.12 -2.35 5.29 -26.65 -0.14 -2.49 16 12 C -0.13 -2.07 6.05 -26.57 -0.16 -2.23 16 13 C -0.08 -1.18 5.66 -27.92 -0.16 -1.34 16 14 C 0.19 3.41 6.49 -81.73 -0.53 2.88 16 15 C -0.29 -4.52 9.50 -39.75 -0.38 -4.90 16 16 C -0.02 -0.36 10.10 -39.64 -0.40 -0.76 16 17 C -0.27 -5.37 9.98 -39.51 -0.39 -5.76 16 18 C 0.50 12.27 7.06 -15.22 -0.11 12.16 16 19 O -0.50 -14.65 14.15 4.86 0.07 -14.59 16 20 N -0.47 -10.69 2.93 -109.22 -0.32 -11.01 16 21 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 22 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 23 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 24 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.94 8.09 -51.92 -0.42 0.52 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.13 1.54 8.03 -52.48 -0.42 1.11 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 250.26 15.07 3.77 3.77 Total: -1.00 -32.61 250.26 -7.23 -39.84 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.69 Total: -1.29 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.74 Total: -8.75 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.39 Total: -36.88 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.59 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.61 -7.23 -39.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584634486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.649 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds