Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47335 * 240.00164 * 3 2 1 5 5 H 1.48505 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46785 * 120.00138 * 3 2 1 7 7 C 1.38656 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99602 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.35744 * 116.99971 * 185.06051 * 9 7 2 11 11 C 1.38897 * 120.10688 * 354.49529 * 10 9 7 12 12 C 1.37963 * 119.86731 * 179.97438 * 11 10 9 13 13 C 1.38591 * 120.30426 * 0.02562 * 12 11 10 14 14 C 1.38294 * 119.96137 * 0.02562 * 13 12 11 15 15 C 1.38377 * 119.91846 * 359.97438 * 14 13 12 16 16 C 1.51384 * 109.75067 * 180.02562 * 14 13 12 17 17 H 1.08998 * 110.30258 * 101.72469 * 16 14 13 18 18 N 1.46898 * 110.38446 * 223.82828 * 16 14 13 19 19 C 1.54332 * 105.17344 * 342.79558 * 16 14 13 20 20 C 1.51703 * 130.22959 * 179.84653 * 13 12 11 21 21 H 0.97004 * 119.99736 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.06724 * 0.02562 * 11 10 9 23 23 H 1.07993 * 119.84960 * 179.97438 * 12 11 10 24 24 H 1.08000 * 119.91624 * 179.97438 * 15 14 13 25 25 H 1.00903 * 111.00206 * 295.80140 * 18 16 14 26 26 H 1.00904 * 111.00196 * 59.75269 * 18 16 14 27 27 H 1.09004 * 110.82085 * 144.60555 * 19 16 14 28 28 H 1.08997 * 110.82129 * 267.95438 * 19 16 14 29 29 H 1.08995 * 110.25559 * 78.25912 * 20 13 12 30 30 H 1.09007 * 110.48871 * 316.01547 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4404 0.0929 12 6 4.1997 -4.5981 0.2017 13 6 3.5675 -5.8255 0.3230 14 6 2.1863 -5.8927 0.3349 15 6 1.4379 -4.7338 0.2261 16 6 1.7455 -7.3340 0.4768 17 1 1.4404 -7.5368 1.5034 18 7 0.6425 -7.6252 -0.4486 19 6 2.9873 -8.1741 0.1112 20 6 4.1512 -7.2197 0.4522 21 1 -0.4850 0.8401 0.0004 22 1 3.9540 -2.4860 -0.0010 23 1 5.2784 -4.5479 0.1914 24 1 0.3592 -4.7864 0.2349 25 1 -0.1756 -7.0810 -0.2190 26 1 0.9228 -7.4703 -1.4055 27 1 3.0364 -9.0777 0.7188 28 1 2.9884 -8.4223 -0.9502 29 1 4.4951 -7.3919 1.4720 30 1 4.9715 -7.3568 -0.2526 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606260699.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -9.861395 kcal Electronic energy + Delta-G solvation = -14242.503879 eV Core-core repulsion = 11809.752964 eV Total energy + Delta-G solvation = -2432.750915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71580 -37.81528 -34.71855 -32.53646 -31.91554 -29.75246 -27.55425 -25.76896 -24.59497 -22.11740 -20.35118 -20.15357 -17.69797 -16.82674 -15.93143 -15.21731 -14.61009 -14.45033 -14.20644 -14.00711 -13.57301 -12.92314 -12.56402 -12.30819 -11.96128 -11.65194 -11.43112 -11.14287 -11.03190 -10.98132 -10.52829 -10.48481 -10.27694 -9.40515 -8.83395 -8.64351 -8.07846 -7.16148 -6.47617 -4.06952 2.08813 2.28485 3.11026 3.12176 3.15092 3.93395 4.45719 4.65117 4.83743 5.03740 5.06889 5.24189 5.41086 5.61951 5.68838 5.79725 5.93702 5.99477 6.08738 6.13834 6.30677 6.40542 6.59691 6.90828 6.99860 7.14461 7.28497 7.38161 7.40544 7.59770 7.76258 7.96856 8.97766 9.67161 10.70341 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053514 B = 0.006898 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.106600 B = 4058.159693 C = 4524.382720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.155 3.845 11 C -0.229 4.229 12 C -0.060 4.060 13 C -0.190 4.190 14 C -0.097 4.097 15 C -0.177 4.177 16 C 0.133 3.867 17 H 0.089 0.911 18 N -0.840 5.840 19 C -0.109 4.109 20 C -0.067 4.067 21 H 0.271 0.729 22 H 0.129 0.871 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.342 0.658 26 H 0.340 0.660 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -9.838 0.213 11.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.101 3.899 11 C -0.248 4.248 12 C -0.079 4.079 13 C -0.191 4.191 14 C -0.099 4.099 15 C -0.197 4.197 16 C 0.022 3.978 17 H 0.107 0.893 18 N -0.368 5.368 19 C -0.147 4.147 20 C -0.104 4.104 21 H 0.081 0.919 22 H 0.146 0.854 23 H 0.123 0.877 24 H 0.129 0.871 25 H 0.155 0.845 26 H 0.153 0.847 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.365 -10.381 0.475 11.695 hybrid contribution 0.619 2.055 -0.227 2.158 sum 5.984 -8.326 0.248 10.257 Atomic orbital electron populations 1.70031 1.05963 1.27817 1.45980 1.25290 0.95854 0.98824 0.96499 0.85776 0.78705 0.79732 0.79194 1.19489 1.20222 1.19490 1.21276 0.91761 0.80799 1.53146 0.89147 1.83968 1.34224 1.11347 1.78568 1.19160 0.90214 0.87894 0.92618 1.21095 0.93815 0.98693 1.11204 1.20243 0.98328 0.91156 0.98149 1.20056 0.94120 0.94051 1.10882 1.20920 0.94544 0.94944 0.99480 1.19482 0.98984 0.89452 1.11747 1.20935 0.91091 0.88731 0.97050 0.89335 1.59077 1.07473 1.63458 1.06760 1.22287 0.93311 0.97368 1.01708 1.20855 0.97328 0.91382 1.00855 0.91936 0.85351 0.87652 0.87061 0.84525 0.84731 0.90939 0.91050 0.91543 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 9 O -0.18 -5.09 9.76 0.07 0.00 -5.09 16 10 C 0.15 3.78 6.64 -39.15 -0.26 3.52 16 11 C -0.23 -5.04 9.17 -39.44 -0.36 -5.40 16 12 C -0.06 -1.14 10.03 -39.55 -0.40 -1.54 16 13 C -0.19 -3.35 6.15 -103.98 -0.64 -3.99 16 14 C -0.10 -1.76 5.76 -104.21 -0.60 -2.36 16 15 C -0.18 -3.78 9.90 -39.34 -0.39 -4.17 16 16 C 0.13 1.95 4.00 -67.83 -0.27 1.68 16 17 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 18 N -0.84 -11.34 9.28 -4.77 -0.04 -11.39 16 19 C -0.11 -1.37 6.74 -25.34 -0.17 -1.54 16 20 C -0.07 -0.91 6.79 -26.69 -0.18 -1.09 16 21 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.13 2.81 5.65 -52.49 -0.30 2.51 16 23 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 24 H 0.11 2.30 8.05 -52.49 -0.42 1.88 16 25 H 0.34 4.54 9.02 -39.29 -0.35 4.18 16 26 H 0.34 4.48 8.88 -39.29 -0.35 4.13 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -30.14 257.46 -6.86 -37.00 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.36 Total: 9.36 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.07 Total: -24.66 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.71 Total: -35.97 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.14 -6.86 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260699.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds