Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 120.00226 * 2 1 4 4 H 1.48496 * 109.47335 * 240.00164 * 3 2 1 5 5 H 1.48505 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46785 * 120.00138 * 3 2 1 7 7 C 1.38656 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99602 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.35744 * 116.99971 * 185.06051 * 9 7 2 11 11 C 1.38897 * 120.10688 * 354.49529 * 10 9 7 12 12 C 1.37963 * 119.86731 * 179.97438 * 11 10 9 13 13 C 1.38591 * 120.30426 * 0.02562 * 12 11 10 14 14 C 1.38294 * 119.96137 * 0.02562 * 13 12 11 15 15 C 1.38377 * 119.91846 * 359.97438 * 14 13 12 16 16 C 1.51384 * 109.75067 * 180.02562 * 14 13 12 17 17 H 1.08998 * 110.30258 * 101.72469 * 16 14 13 18 18 N 1.46898 * 110.38446 * 223.82828 * 16 14 13 19 19 C 1.54332 * 105.17344 * 342.79558 * 16 14 13 20 20 C 1.51703 * 130.22959 * 179.84653 * 13 12 11 21 21 H 0.97004 * 119.99736 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.06724 * 0.02562 * 11 10 9 23 23 H 1.07993 * 119.84960 * 179.97438 * 12 11 10 24 24 H 1.08000 * 119.91624 * 179.97438 * 15 14 13 25 25 H 1.00903 * 111.00206 * 295.80140 * 18 16 14 26 26 H 1.00904 * 111.00196 * 59.75269 * 18 16 14 27 27 H 1.09004 * 110.82085 * 144.60555 * 19 16 14 28 28 H 1.08997 * 110.82129 * 267.95438 * 19 16 14 29 29 H 1.08995 * 110.25559 * 78.25912 * 20 13 12 30 30 H 1.09007 * 110.48871 * 316.01547 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4404 0.0929 12 6 4.1997 -4.5981 0.2017 13 6 3.5675 -5.8255 0.3230 14 6 2.1863 -5.8927 0.3349 15 6 1.4379 -4.7338 0.2261 16 6 1.7455 -7.3340 0.4768 17 1 1.4404 -7.5368 1.5034 18 7 0.6425 -7.6252 -0.4486 19 6 2.9873 -8.1741 0.1112 20 6 4.1512 -7.2197 0.4522 21 1 -0.4850 0.8401 0.0004 22 1 3.9540 -2.4860 -0.0010 23 1 5.2784 -4.5479 0.1914 24 1 0.3592 -4.7864 0.2349 25 1 -0.1756 -7.0810 -0.2190 26 1 0.9228 -7.4703 -1.4055 27 1 3.0364 -9.0777 0.7188 28 1 2.9884 -8.4223 -0.9502 29 1 4.4951 -7.3919 1.4720 30 1 4.9715 -7.3568 -0.2526 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606260699.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -30.784159 kcal Electronic energy + Delta-G solvation = -14243.411158 eV Core-core repulsion = 11809.752964 eV Total energy + Delta-G solvation = -2433.658194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26479 -39.51114 -36.22185 -34.34221 -33.37062 -31.29646 -29.04932 -27.52673 -26.09666 -23.60320 -22.02930 -21.41921 -19.50075 -18.67660 -17.12733 -16.64802 -16.32193 -15.93683 -15.73207 -15.52048 -15.37997 -14.47668 -14.08510 -13.70151 -13.62004 -13.15931 -12.85943 -12.65995 -12.55284 -12.21762 -12.18108 -11.94213 -11.56025 -11.25477 -10.77243 -9.93083 -9.58056 -8.87066 -8.50173 -6.18957 0.47027 0.65253 1.32803 1.43645 1.49472 2.15097 2.75376 3.08784 3.24537 3.60616 3.76423 3.97429 4.12184 4.20142 4.34891 4.48328 4.53333 4.71168 4.83714 4.91173 5.00195 5.09928 5.18400 5.33962 5.38258 5.54588 5.66430 5.74332 5.98408 6.15098 6.17820 6.47954 6.94117 7.74128 8.72889 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053514 B = 0.006898 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.106600 B = 4058.159693 C = 4524.382720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.101 0.899 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.240 4.240 12 C -0.063 4.063 13 C -0.175 4.175 14 C -0.097 4.097 15 C -0.189 4.189 16 C 0.133 3.867 17 H 0.096 0.904 18 N -0.834 5.834 19 C -0.101 4.101 20 C -0.064 4.064 21 H 0.273 0.727 22 H 0.121 0.879 23 H 0.141 0.859 24 H 0.105 0.895 25 H 0.342 0.658 26 H 0.343 0.657 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -12.050 0.441 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.118 0.882 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.260 4.260 12 C -0.081 4.081 13 C -0.176 4.176 14 C -0.099 4.099 15 C -0.209 4.209 16 C 0.021 3.979 17 H 0.114 0.886 18 N -0.361 5.361 19 C -0.138 4.138 20 C -0.101 4.101 21 H 0.082 0.918 22 H 0.139 0.861 23 H 0.159 0.841 24 H 0.123 0.877 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.894 -12.657 0.701 14.933 hybrid contribution -0.073 2.387 -0.275 2.404 sum 7.820 -10.269 0.426 12.915 Atomic orbital electron populations 1.70181 1.08051 1.28937 1.48745 1.26616 0.96877 1.02760 0.95738 0.84639 0.77405 0.74157 0.79952 1.18084 1.19484 1.18174 1.21793 0.92518 0.81440 1.53567 0.88173 1.83929 1.35839 1.12491 1.81627 1.19713 0.91578 0.87814 0.94675 1.21208 0.93085 0.99934 1.11750 1.20614 1.00029 0.90451 0.96965 1.20782 0.94157 0.95930 1.06714 1.21471 0.95020 0.95921 0.97523 1.19687 0.99178 0.89885 1.12137 1.21136 0.92511 0.86374 0.97842 0.88579 1.59109 1.07172 1.62988 1.06845 1.22330 0.91034 0.97670 1.02788 1.21001 0.98191 0.88015 1.02882 0.91771 0.86082 0.84108 0.87726 0.84586 0.84429 0.88098 0.90377 0.89395 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.10 13.67 21.61 0.30 -56.81 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 3 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.42 -24.69 9.49 67.92 0.64 -24.05 16 8 H 0.10 5.43 5.21 -2.91 -0.02 5.42 16 9 O -0.23 -14.25 9.76 -22.67 -0.22 -14.48 16 10 C 0.11 5.75 6.64 22.55 0.15 5.90 16 11 C -0.24 -10.77 9.17 22.36 0.20 -10.56 16 12 C -0.06 -2.23 10.03 22.29 0.22 -2.00 16 13 C -0.17 -5.61 6.15 -19.45 -0.12 -5.73 16 14 C -0.10 -3.37 5.76 -19.60 -0.11 -3.48 16 15 C -0.19 -8.32 9.90 22.42 0.22 -8.10 16 16 C 0.13 3.46 4.00 44.84 0.18 3.64 16 17 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 18 N -0.83 -20.67 9.28 -169.00 -1.57 -22.24 16 19 C -0.10 -2.01 6.74 31.50 0.21 -1.80 16 20 C -0.06 -1.38 6.79 30.62 0.21 -1.17 16 21 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 22 H 0.12 5.47 5.65 -2.91 -0.02 5.45 16 23 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 24 H 0.10 4.59 8.05 -2.91 -0.02 4.56 16 25 H 0.34 8.71 9.02 -89.69 -0.81 7.90 16 26 H 0.34 8.30 8.88 -89.69 -0.80 7.50 16 27 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -70.00 257.46 2.38 -67.62 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.43 Total: 28.94 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 2.28 Total: -48.18 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.27 Total: -79.05 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.48 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.00 2.38 -67.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260699.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.837 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds