Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48494 * 109.46948 * 90.00396 * 3 2 1 5 5 H 1.48503 * 109.46922 * 210.00072 * 3 2 1 6 6 H 1.48494 * 109.47073 * 330.00050 * 3 2 1 7 7 C 1.37876 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00407 * 185.21750 * 7 2 1 9 9 C 1.50699 * 119.99991 * 5.21199 * 7 2 1 10 10 O 1.42896 * 109.68318 * 305.22713 * 9 7 2 11 11 C 1.53323 * 109.68763 * 65.75817 * 9 7 2 12 12 C 1.52712 * 108.44253 * 189.52373 * 11 9 7 13 13 C 1.50726 * 110.59702 * 308.73778 * 12 11 9 14 14 N 1.32706 * 117.56391 * 197.62738 * 13 12 11 15 15 C 1.31505 * 122.39685 * 180.66635 * 14 13 12 16 16 C 1.38240 * 120.61565 * 359.93838 * 15 14 13 17 17 C 1.38415 * 118.84102 * 359.86626 * 16 15 14 18 18 C 1.37599 * 122.33540 * 17.96314 * 13 12 11 19 19 C 1.50498 * 122.84433 * 359.22536 * 18 13 12 20 20 H 0.97000 * 120.00138 * 174.95526 * 1 2 3 21 21 H 0.96703 * 114.00526 * 295.01460 * 10 9 7 22 22 H 1.09006 * 109.63726 * 309.23387 * 11 9 7 23 23 H 1.09000 * 109.64145 * 69.85787 * 11 9 7 24 24 H 1.08994 * 109.26965 * 188.43186 * 12 11 9 25 25 H 1.09002 * 109.18921 * 68.98835 * 12 11 9 26 26 H 1.08002 * 119.69236 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.58196 * 179.89177 * 16 15 14 28 28 H 1.07991 * 120.56553 * 180.02562 * 17 16 15 29 29 H 1.09006 * 109.25734 * 257.33817 * 19 18 13 30 30 H 1.08997 * 109.22748 * 137.87578 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0811 -1.1961 0.0845 9 6 1.2557 -2.4964 -0.1197 10 8 0.2593 -2.5739 0.9017 11 6 0.5903 -2.5854 -1.4981 12 6 -0.3481 -3.7902 -1.5047 13 6 0.3715 -5.0255 -1.0273 14 7 -0.1760 -6.2016 -1.3064 15 6 0.3638 -7.3385 -0.9249 16 6 1.5447 -7.3510 -0.2064 17 6 2.1512 -6.1457 0.1025 18 6 1.5503 -4.9635 -0.3202 19 6 2.2296 -3.6648 0.0218 20 1 -0.4850 -0.8368 -0.0739 21 1 0.6178 -2.6084 1.7992 22 1 0.0208 -1.6758 -1.6895 23 1 1.3536 -2.7117 -2.2659 24 1 -0.7134 -3.9560 -2.5181 25 1 -1.1933 -3.5895 -0.8463 26 1 -0.1197 -8.2711 -1.1758 27 1 1.9866 -8.2848 0.1081 28 1 3.0744 -6.1230 0.6621 29 1 3.0739 -3.5126 -0.6507 30 1 2.5917 -3.7088 1.0490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606260803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -30.010618 kcal Electronic energy + Delta-G solvation = -14964.460816 eV Core-core repulsion = 12530.836165 eV Total energy + Delta-G solvation = -2433.624651 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17604 -37.26759 -33.22512 -32.83717 -32.17179 -29.46631 -28.71666 -24.79542 -23.40249 -22.06444 -21.77698 -18.96354 -17.45611 -16.13617 -16.09852 -15.32662 -14.25379 -14.01795 -13.72236 -13.53151 -13.06118 -12.70474 -12.57130 -12.37125 -11.79032 -11.39648 -11.14092 -10.80538 -10.69054 -10.29676 -10.12372 -9.97016 -9.37892 -9.27521 -8.88263 -8.44808 -8.28886 -7.94668 -6.27326 -4.16718 1.51690 1.62420 3.41245 3.44724 3.60222 4.15056 4.50033 4.68638 5.09429 5.17136 5.31783 5.35614 5.45594 5.62526 5.78879 5.91756 6.10304 6.13773 6.24661 6.30154 6.43913 6.51234 6.60496 6.77061 6.94453 7.10518 7.23498 7.52146 8.02517 8.34562 8.40341 8.90708 9.08031 9.69278 11.08934 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.058258 B = 0.008573 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.507983 B = 3265.343202 C = 3501.959755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 1.064 2.936 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.643 4.643 8 H 0.050 0.950 9 C 0.240 3.760 10 O -0.572 6.572 11 C -0.099 4.099 12 C -0.065 4.065 13 C 0.151 3.849 14 N -0.496 5.496 15 C 0.087 3.913 16 C -0.189 4.189 17 C -0.087 4.087 18 C -0.109 4.109 19 C -0.095 4.095 20 H 0.292 0.708 21 H 0.355 0.645 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.148 0.852 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -9.893 -0.519 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.172 4.172 3 Si 0.893 3.107 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.680 4.680 8 H 0.068 0.932 9 C 0.201 3.799 10 O -0.376 6.376 11 C -0.137 4.137 12 C -0.103 4.103 13 C 0.016 3.984 14 N -0.205 5.205 15 C -0.072 4.072 16 C -0.209 4.209 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.133 4.133 20 H 0.107 0.893 21 H 0.200 0.800 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.165 0.835 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.054 -8.270 -1.464 8.646 hybrid contribution 1.601 -1.887 0.977 2.660 sum 3.655 -10.157 -0.488 10.806 Atomic orbital electron populations 1.70586 1.06817 1.33491 1.41977 1.25659 0.96543 1.02078 0.92887 0.83645 0.74807 0.75535 0.76749 1.21550 1.21572 1.20982 1.22308 0.94533 0.92058 1.59137 0.93213 1.18820 0.84505 0.91146 0.85419 1.86392 1.37532 1.96877 1.16803 1.21628 0.97883 0.96607 0.97626 1.20379 0.98983 0.90502 1.00444 1.21230 0.91318 0.93002 0.92874 1.67551 1.33889 0.98255 1.20775 1.22509 0.93263 0.96128 0.95327 1.21964 0.98192 0.98488 1.02227 1.21608 0.99395 0.92121 0.98163 1.20773 0.95955 0.96628 0.97693 1.21213 0.99464 0.91684 1.00896 0.89311 0.80017 0.90087 0.92475 0.91507 0.89559 0.83516 0.85560 0.85521 0.90586 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 12.88 55.43 0.71 -25.27 16 2 C 0.04 1.03 5.16 -17.82 -0.09 0.94 16 3 Si 1.06 24.34 29.91 -169.99 -5.08 19.25 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.64 -17.02 8.21 -34.44 -0.28 -17.30 16 8 H 0.05 1.31 7.76 -52.49 -0.41 0.91 16 9 C 0.24 5.67 0.54 -91.72 -0.05 5.62 16 10 O -0.57 -13.83 9.95 -35.23 -0.35 -14.18 16 11 C -0.10 -2.26 4.75 -26.71 -0.13 -2.39 16 12 C -0.07 -1.35 5.52 -28.02 -0.15 -1.51 16 13 C 0.15 3.02 6.57 -82.44 -0.54 2.47 16 14 N -0.50 -9.32 10.19 -9.51 -0.10 -9.42 16 15 C 0.09 1.34 11.19 -17.69 -0.20 1.14 16 16 C -0.19 -2.66 10.12 -39.52 -0.40 -3.06 16 17 C -0.09 -1.38 9.75 -39.16 -0.38 -1.76 16 18 C -0.11 -2.07 5.63 -104.60 -0.59 -2.65 16 19 C -0.09 -1.91 4.58 -28.10 -0.13 -2.04 16 20 H 0.29 8.54 4.91 -40.82 -0.20 8.34 16 21 H 0.35 7.82 9.03 45.56 0.41 8.23 16 22 H 0.08 2.03 6.16 -51.93 -0.32 1.71 16 23 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.09 1.89 7.73 -51.93 -0.40 1.49 16 26 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 30 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 LS Contribution 248.47 15.07 3.74 3.74 Total: -1.00 -30.03 248.47 -6.68 -36.72 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -2.67 Total: 9.69 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.94 Total: -20.54 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.62 Total: -34.69 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.35 Total: -14.18 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.03 -6.68 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.707 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds