Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48494 * 109.46948 * 90.00396 * 3 2 1 5 5 H 1.48503 * 109.46922 * 210.00072 * 3 2 1 6 6 H 1.48494 * 109.47073 * 330.00050 * 3 2 1 7 7 C 1.37876 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00407 * 185.21750 * 7 2 1 9 9 C 1.50699 * 119.99991 * 5.21199 * 7 2 1 10 10 O 1.42896 * 109.68318 * 305.22713 * 9 7 2 11 11 C 1.53323 * 109.68763 * 65.75817 * 9 7 2 12 12 C 1.52712 * 108.44253 * 189.52373 * 11 9 7 13 13 C 1.50726 * 110.59702 * 308.73778 * 12 11 9 14 14 N 1.32706 * 117.56391 * 197.62738 * 13 12 11 15 15 C 1.31505 * 122.39685 * 180.66635 * 14 13 12 16 16 C 1.38240 * 120.61565 * 359.93838 * 15 14 13 17 17 C 1.38415 * 118.84102 * 359.86626 * 16 15 14 18 18 C 1.37599 * 122.33540 * 17.96314 * 13 12 11 19 19 C 1.50498 * 122.84433 * 359.22536 * 18 13 12 20 20 H 0.97000 * 120.00138 * 174.95526 * 1 2 3 21 21 H 0.96703 * 114.00526 * 295.01460 * 10 9 7 22 22 H 1.09006 * 109.63726 * 309.23387 * 11 9 7 23 23 H 1.09000 * 109.64145 * 69.85787 * 11 9 7 24 24 H 1.08994 * 109.26965 * 188.43186 * 12 11 9 25 25 H 1.09002 * 109.18921 * 68.98835 * 12 11 9 26 26 H 1.08002 * 119.69236 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.58196 * 179.89177 * 16 15 14 28 28 H 1.07991 * 120.56553 * 180.02562 * 17 16 15 29 29 H 1.09006 * 109.25734 * 257.33817 * 19 18 13 30 30 H 1.08997 * 109.22748 * 137.87578 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0811 -1.1961 0.0845 9 6 1.2557 -2.4964 -0.1197 10 8 0.2593 -2.5739 0.9017 11 6 0.5903 -2.5854 -1.4981 12 6 -0.3481 -3.7902 -1.5047 13 6 0.3715 -5.0255 -1.0273 14 7 -0.1760 -6.2016 -1.3064 15 6 0.3638 -7.3385 -0.9249 16 6 1.5447 -7.3510 -0.2064 17 6 2.1512 -6.1457 0.1025 18 6 1.5503 -4.9635 -0.3202 19 6 2.2296 -3.6648 0.0218 20 1 -0.4850 -0.8368 -0.0739 21 1 0.6178 -2.6084 1.7992 22 1 0.0208 -1.6758 -1.6895 23 1 1.3536 -2.7117 -2.2659 24 1 -0.7134 -3.9560 -2.5181 25 1 -1.1933 -3.5895 -0.8463 26 1 -0.1197 -8.2711 -1.1758 27 1 1.9866 -8.2848 0.1081 28 1 3.0744 -6.1230 0.6621 29 1 3.0739 -3.5126 -0.6507 30 1 2.5917 -3.7088 1.0490 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606260803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -50.244159 kcal Electronic energy + Delta-G solvation = -14965.338208 eV Core-core repulsion = 12530.836165 eV Total energy + Delta-G solvation = -2434.502043 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57258 -38.98110 -34.88823 -34.35966 -34.06831 -30.95414 -30.37361 -26.66175 -24.95021 -23.48473 -23.37587 -20.67729 -19.42153 -17.67368 -17.35498 -16.91816 -15.78298 -15.68656 -15.44530 -15.13634 -14.71609 -14.36981 -14.10331 -13.79019 -13.41287 -13.11115 -12.83640 -12.59290 -12.36701 -12.09904 -11.91746 -11.83474 -11.06931 -10.58292 -10.51199 -10.28907 -9.95074 -9.61124 -8.41401 -6.32305 0.22742 0.36482 1.55725 1.63394 1.80502 2.60605 2.85027 3.25228 3.35487 3.78811 3.83919 3.98059 4.05969 4.13739 4.24349 4.46193 4.55243 4.63579 4.71989 4.80157 4.85561 5.00113 5.13224 5.21665 5.35241 5.46824 5.69013 5.83274 6.00528 6.26809 6.74214 7.09652 7.22586 7.63528 8.92540 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.058258 B = 0.008573 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.507983 B = 3265.343202 C = 3501.959755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.288 1.288 7 C -0.650 4.650 8 H 0.047 0.953 9 C 0.230 3.770 10 O -0.582 6.582 11 C -0.094 4.094 12 C -0.055 4.055 13 C 0.121 3.879 14 N -0.520 5.520 15 C 0.084 3.916 16 C -0.170 4.170 17 C -0.086 4.086 18 C -0.130 4.130 19 C -0.083 4.083 20 H 0.281 0.719 21 H 0.360 0.640 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.155 0.845 29 H 0.074 0.926 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -12.072 -0.087 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.214 4.214 3 Si 0.932 3.068 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.214 1.214 7 C -0.688 4.688 8 H 0.066 0.934 9 C 0.191 3.809 10 O -0.388 6.388 11 C -0.132 4.132 12 C -0.092 4.092 13 C -0.012 4.012 14 N -0.229 5.229 15 C -0.075 4.075 16 C -0.189 4.189 17 C -0.111 4.111 18 C -0.132 4.132 19 C -0.121 4.121 20 H 0.094 0.906 21 H 0.206 0.794 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.202 0.798 27 H 0.191 0.809 28 H 0.173 0.827 29 H 0.092 0.908 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.619 -10.457 -1.029 11.114 hybrid contribution 1.131 -1.366 0.848 1.966 sum 4.750 -11.824 -0.181 12.743 Atomic orbital electron populations 1.70689 1.07844 1.32864 1.44600 1.26952 0.96582 1.05639 0.92192 0.83055 0.74283 0.72057 0.77421 1.20298 1.19800 1.21371 1.22697 0.94636 0.93558 1.57915 0.93432 1.18889 0.84977 0.91656 0.85345 1.86381 1.38087 1.96940 1.17352 1.21478 0.97959 0.96280 0.97529 1.20138 0.97864 0.90686 1.00553 1.20989 0.92335 0.93032 0.94866 1.67502 1.34811 0.98792 1.21842 1.23258 0.93753 0.96209 0.94313 1.22453 0.96970 0.99633 0.99864 1.21947 1.00166 0.91484 0.97544 1.20691 0.96289 0.97146 0.99101 1.20965 0.98402 0.91299 1.01442 0.90615 0.79396 0.93281 0.92212 0.90685 0.91805 0.79778 0.80896 0.82743 0.90779 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.35 12.88 21.45 0.28 -55.07 16 2 C -0.01 -0.57 5.16 84.66 0.44 -0.13 16 3 Si 1.11 49.25 29.91 68.60 2.05 51.30 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.65 -34.86 8.21 25.60 0.21 -34.65 16 8 H 0.05 2.51 7.76 -2.91 -0.02 2.49 16 9 C 0.23 11.07 0.54 -11.51 -0.01 11.06 16 10 O -0.58 -29.01 9.95 -148.98 -1.48 -30.49 16 11 C -0.09 -4.45 4.75 30.61 0.15 -4.31 16 12 C -0.05 -2.33 5.52 29.76 0.16 -2.17 16 13 C 0.12 4.81 6.57 42.28 0.28 5.09 16 14 N -0.52 -18.70 10.19 -184.00 -1.87 -20.57 16 15 C 0.08 2.26 11.19 84.74 0.95 3.21 16 16 C -0.17 -3.94 10.12 22.31 0.23 -3.72 16 17 C -0.09 -2.39 9.75 22.54 0.22 -2.17 16 18 C -0.13 -4.77 5.63 -19.85 -0.11 -4.88 16 19 C -0.08 -3.31 4.58 29.71 0.14 -3.18 16 20 H 0.28 17.14 4.91 -92.71 -0.46 16.68 16 21 H 0.36 16.26 9.03 -74.06 -0.67 15.59 16 22 H 0.05 2.60 6.16 -2.38 -0.01 2.58 16 23 H 0.06 2.71 8.10 -2.39 -0.02 2.69 16 24 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.06 2.95 7.73 -2.39 -0.02 2.93 16 26 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 27 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.07 2.91 8.11 -2.38 -0.02 2.89 16 30 H 0.07 2.77 8.12 -2.39 -0.02 2.75 16 Total: -1.00 -66.07 248.47 2.41 -63.66 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.79 Total: 27.03 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 2.65 Total: -35.85 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.60 Total: -75.65 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.48 Total: -30.49 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.05 Total: 51.30 kcal Total: -66.07 2.41 -63.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.418 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds