Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 119.99593 * 2 1 4 4 H 1.48497 * 109.47297 * 270.00382 * 3 2 1 5 5 H 1.48506 * 109.47173 * 29.99698 * 3 2 1 6 6 H 1.48501 * 109.47164 * 149.99675 * 3 2 1 7 7 C 1.38647 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99701 * 0.02562 * 7 2 1 9 9 O 1.34825 * 120.00240 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00599 * 185.48213 * 9 7 2 11 11 C 1.38952 * 120.03772 * 186.16823 * 10 9 7 12 12 C 1.38129 * 120.08263 * 180.32373 * 11 10 9 13 13 C 1.38192 * 120.13826 * 359.67223 * 12 11 10 14 14 C 1.38967 * 120.06585 * 0.02562 * 13 12 11 15 15 N 1.39674 * 120.04210 * 180.02562 * 14 13 12 16 16 C 1.47470 * 110.99696 * 123.58921 * 15 14 13 17 17 C 1.53512 * 87.93240 * 138.70354 * 16 15 14 18 18 C 1.47477 * 110.99732 * 219.55964 * 15 14 13 19 19 C 1.38725 * 120.02703 * 5.88551 * 10 9 7 20 20 H 0.97000 * 120.00537 * 0.02562 * 1 2 3 21 21 H 1.08008 * 119.95848 * 359.97438 * 11 10 9 22 22 H 1.07996 * 119.93240 * 179.69563 * 12 11 10 23 23 H 1.08001 * 119.96472 * 180.02562 * 13 12 11 24 24 H 1.08997 * 113.47911 * 253.46563 * 16 15 14 25 25 H 1.08994 * 113.48383 * 23.93944 * 16 15 14 26 26 H 1.08998 * 114.17813 * 220.32720 * 17 16 15 27 27 H 1.09007 * 114.17476 * 87.61746 * 17 16 15 28 28 H 1.08997 * 113.48078 * 336.06784 * 18 15 14 29 29 H 1.09000 * 113.47503 * 106.47110 * 18 15 14 30 30 H 1.08007 * 120.07043 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4468 2.6528 0.7000 6 1 3.5471 1.4404 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3572 -1.2006 0.0000 10 6 3.9736 -2.4046 -0.1150 11 6 5.3551 -2.4931 0.0059 12 6 5.9839 -3.7167 -0.1176 13 6 5.2412 -4.8577 -0.3549 14 6 3.8587 -4.7770 -0.4706 15 7 3.1085 -5.9306 -0.7099 16 6 2.0817 -6.1187 0.3317 17 6 1.1088 -6.5341 -0.7808 18 6 2.0142 -5.6614 -1.6612 19 6 3.2244 -3.5487 -0.3474 20 1 -0.4851 0.8400 -0.0004 21 1 5.9384 -1.6031 0.1910 22 1 7.0582 -3.7820 -0.0281 23 1 5.7358 -5.8130 -0.4506 24 1 2.3130 -6.9238 1.0291 25 1 1.7978 -5.1939 0.8338 26 1 0.0978 -6.1458 -0.6576 27 1 1.1376 -7.5959 -1.0255 28 1 1.7125 -4.6145 -1.6911 29 1 2.1890 -6.0780 -2.6532 30 1 2.1500 -3.4832 -0.4368 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685971295.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = 26.149454 kcal Electronic energy + Delta-G solvation = -14502.819659 eV Core-core repulsion = 12071.630291 eV Total energy + Delta-G solvation = -2431.189367 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.00775 -40.26360 -37.86005 -34.49883 -32.41291 -30.89176 -28.38725 -27.10638 -26.91046 -23.53763 -22.59575 -20.78485 -19.82623 -19.42326 -17.17667 -16.96530 -16.61360 -16.04986 -15.85530 -15.66506 -15.27778 -14.93597 -14.31232 -14.14169 -13.70882 -13.10365 -12.99727 -12.68321 -12.46966 -12.42999 -12.10891 -11.94404 -11.66491 -11.46366 -10.94104 -10.11156 -9.65906 -9.13795 -8.54175 -6.27549 0.34330 0.62031 1.29151 1.33078 1.49523 2.24832 2.67833 2.94742 3.00751 3.05486 3.50537 3.83875 4.07446 4.25388 4.27605 4.40217 4.44812 4.55860 4.64550 4.68579 4.85146 4.88798 5.00216 5.02426 5.18341 5.33286 5.52930 5.57049 5.69632 5.82234 6.03088 6.37870 6.79912 7.53131 8.57355 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.009688 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.552571 B = 2889.536313 C = 3707.285555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.075 0.925 9 O -0.243 6.243 10 C 0.126 3.874 11 C -0.193 4.193 12 C -0.060 4.060 13 C -0.163 4.163 14 C 0.083 3.917 15 N -0.439 5.439 16 C -0.003 4.003 17 C -0.127 4.127 18 C -0.012 4.012 19 C -0.262 4.262 20 H 0.285 0.715 21 H 0.134 0.866 22 H 0.167 0.833 23 H 0.145 0.855 24 H 0.104 0.896 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 -9.635 -0.956 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.092 0.908 9 O -0.150 6.150 10 C 0.076 3.924 11 C -0.212 4.212 12 C -0.079 4.079 13 C -0.182 4.182 14 C -0.012 4.012 15 N -0.159 5.159 16 C -0.130 4.130 17 C -0.164 4.164 18 C -0.140 4.140 19 C -0.282 4.282 20 H 0.095 0.905 21 H 0.152 0.848 22 H 0.185 0.815 23 H 0.163 0.837 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.529 -9.808 -1.060 12.410 hybrid contribution -0.951 1.541 0.147 1.817 sum 6.577 -8.266 -0.913 10.603 Atomic orbital electron populations 1.69723 1.06862 1.29678 1.49834 1.25277 0.95899 1.02137 0.95368 0.85220 0.78881 0.77353 0.79289 1.19147 1.19045 1.18597 1.20594 0.78067 0.95852 1.53034 0.90765 1.83537 1.21210 1.27208 1.83072 1.19577 0.93238 0.84909 0.94687 1.20662 0.90445 1.00241 1.09832 1.21152 1.01023 0.90028 0.95668 1.20949 0.91366 0.99753 1.06170 1.19435 0.94860 0.88935 0.97939 1.66882 1.13592 1.28161 1.07298 1.23914 0.91643 1.01393 0.96043 1.23130 0.97581 1.01612 0.94121 1.24016 0.91410 0.99642 0.98903 1.21610 1.00365 0.93893 1.12377 0.90498 0.84840 0.81520 0.83707 0.87769 0.93188 0.89995 0.86260 0.92823 0.88260 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 13.96 21.61 0.30 -54.47 16 2 C 0.01 0.69 5.49 84.83 0.47 1.16 16 3 Si 0.97 45.38 28.62 68.60 1.96 47.34 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.40 -23.63 9.90 67.92 0.67 -22.96 16 8 H 0.07 4.64 5.53 -2.91 -0.02 4.62 16 9 O -0.24 -13.30 8.58 -22.70 -0.19 -13.49 16 10 C 0.13 5.97 6.64 22.56 0.15 6.12 16 11 C -0.19 -7.37 9.99 22.42 0.22 -7.14 16 12 C -0.06 -1.85 10.03 22.23 0.22 -1.63 16 13 C -0.16 -5.29 9.97 22.43 0.22 -5.07 16 14 C 0.08 3.13 5.24 38.20 0.20 3.33 16 15 N -0.44 -14.44 6.44 -725.55 -4.68 -19.12 16 16 C 0.00 -0.09 7.53 83.57 0.63 0.54 16 17 C -0.13 -3.18 8.47 30.94 0.26 -2.92 16 18 C -0.01 -0.38 7.50 83.57 0.63 0.25 16 19 C -0.26 -11.84 6.93 22.52 0.16 -11.68 16 20 H 0.29 15.55 8.31 -92.71 -0.77 14.78 16 21 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 22 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 23 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 24 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.05 1.79 6.80 -2.39 -0.02 1.78 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.05 2.02 5.70 -2.39 -0.01 2.01 16 29 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.11 5.56 3.70 -2.91 -0.01 5.55 16 Total: -1.00 -65.46 253.39 2.37 -63.09 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.15 Total: 16.66 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.83 Total: -40.01 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -4.37 Total: -73.58 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.19 Total: -13.49 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.96 Total: 47.34 kcal Total: -65.46 2.37 -63.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685971295.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.239 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds