Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.37972 * 119.87929 * 259.72606 * 11 10 9 13 13 C 1.38242 * 120.34901 * 179.81928 * 12 11 10 14 14 C 1.38385 * 119.76724 * 0.39403 * 13 12 11 15 15 C 1.37699 * 119.97882 * 359.68557 * 14 13 12 16 16 C 1.38918 * 120.78818 * 0.30025 * 15 14 13 17 17 O 1.36129 * 111.23385 * 179.29170 * 16 15 14 18 18 C 1.43772 * 109.25982 * 18.86322 * 17 16 15 19 19 C 1.51643 * 132.17907 * 180.54895 * 15 14 13 20 20 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 23 23 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 24 24 H 1.08004 * 119.82236 * 0.07535 * 12 11 10 25 25 H 1.07999 * 120.11040 * 180.12559 * 13 12 11 26 26 H 1.08002 * 120.01003 * 179.70184 * 14 13 12 27 27 H 1.09004 * 110.74301 * 90.65418 * 18 17 16 28 28 H 1.09002 * 110.74782 * 213.80978 * 18 17 16 29 29 H 1.08998 * 110.94025 * 46.11767 * 19 15 14 30 30 H 1.09007 * 110.96937 * 282.44300 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0784 -4.8023 0.0012 12 6 0.7943 -5.4631 1.1786 13 6 -0.1054 -6.5127 1.1910 14 6 -0.7174 -6.9069 0.0141 15 6 -0.4342 -6.2498 -1.1624 16 6 0.4678 -5.1935 -1.1875 17 8 0.6126 -4.6988 -2.4474 18 6 -0.5067 -5.1108 -3.2503 19 6 -0.9399 -6.4359 -2.5798 20 1 -0.4850 0.8401 0.0004 21 1 0.3554 -2.3881 0.0005 22 1 2.6845 -3.7147 -0.8894 23 1 2.6845 -3.7147 0.8905 24 1 1.2742 -5.1561 2.0961 25 1 -0.3264 -7.0259 2.1152 26 1 -1.4173 -7.7295 0.0185 27 1 -1.3083 -4.3736 -3.2024 28 1 -0.2002 -5.2792 -4.2827 29 1 -2.0244 -6.5441 -2.5954 30 1 -0.4582 -7.2895 -3.0569 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692980732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 5.627794 kcal Electronic energy + Delta-G solvation = -14349.300709 eV Core-core repulsion = 11917.221456 eV Total energy + Delta-G solvation = -2432.079253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76742 -37.26329 -34.72309 -32.56142 -31.05573 -29.36357 -28.91163 -25.39312 -23.17058 -22.57071 -21.65887 -20.25217 -17.18682 -17.01110 -16.20457 -15.84171 -15.12571 -14.54670 -13.69598 -13.44604 -13.29390 -12.99289 -12.81123 -12.33341 -12.05271 -11.98721 -11.49992 -11.23307 -10.94301 -10.73231 -10.59054 -10.34756 -9.98307 -9.68584 -8.81075 -8.42845 -7.75475 -6.83140 -5.67918 -2.96231 1.59127 1.69736 3.49478 3.52890 3.54532 3.61463 4.02879 4.58271 4.68399 4.76774 5.08850 5.16910 5.32869 5.46184 5.60121 5.63527 5.71827 5.80499 5.86288 5.92707 6.25111 6.33019 6.42575 6.64731 6.73307 6.74528 6.93479 7.12006 7.56295 7.76173 8.50083 9.61262 10.19223 10.55679 11.54963 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.007675 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.675164 B = 3647.521893 C = 4046.147269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.192 3.808 11 C -0.097 4.097 12 C -0.073 4.073 13 C -0.155 4.155 14 C -0.079 4.079 15 C -0.187 4.187 16 C 0.126 3.874 17 O -0.292 6.292 18 C 0.050 3.950 19 C -0.107 4.107 20 H 0.254 0.746 21 H 0.384 0.616 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -14.819 -2.609 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.065 3.935 11 C -0.098 4.098 12 C -0.092 4.092 13 C -0.173 4.173 14 C -0.097 4.097 15 C -0.188 4.188 16 C 0.080 3.920 17 O -0.205 6.205 18 C -0.025 4.025 19 C -0.144 4.144 20 H 0.064 0.936 21 H 0.218 0.782 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.148 0.852 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.943 -14.536 -2.726 14.916 hybrid contribution -0.092 0.846 -0.068 0.854 sum -2.035 -13.689 -2.794 14.119 Atomic orbital electron populations 1.69671 1.05107 1.25588 1.57898 1.24738 0.95530 0.97604 1.03215 0.86244 0.78468 0.83516 0.77822 1.21311 1.21731 1.21288 1.19216 0.91024 0.84064 1.42467 0.91175 1.42305 1.05830 0.99311 1.89330 1.19561 0.91680 0.83680 0.98541 1.19571 1.01624 0.99131 0.89470 1.20856 0.96936 0.94556 0.96821 1.20940 0.99389 0.99327 0.97676 1.20158 0.99423 0.99136 0.90973 1.20741 1.03229 0.99280 0.95541 1.19397 0.95241 0.91672 0.85700 1.86926 1.42706 1.72609 1.18245 1.23798 0.88616 0.94751 0.95371 1.21740 1.02044 0.98595 0.91981 0.93578 0.78226 0.95343 0.95473 0.85218 0.85876 0.86425 0.90516 0.88041 0.89512 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.34 13.06 55.49 0.72 -28.62 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.13 29.55 -169.99 -5.02 18.10 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.72 -19.84 5.59 -61.08 -0.34 -20.18 16 10 C 0.19 4.35 6.35 -5.19 -0.03 4.32 16 11 C -0.10 -1.91 5.27 -104.34 -0.55 -2.46 16 12 C -0.07 -1.22 9.63 -39.68 -0.38 -1.60 16 13 C -0.16 -2.20 10.07 -39.53 -0.40 -2.60 16 14 C -0.08 -1.10 10.03 -39.72 -0.40 -1.49 16 15 C -0.19 -2.92 6.27 -104.10 -0.65 -3.57 16 16 C 0.13 2.39 6.76 -38.96 -0.26 2.13 16 17 O -0.29 -5.64 11.05 -20.15 -0.22 -5.86 16 18 C 0.05 0.70 8.01 38.05 0.30 1.00 16 19 C -0.11 -1.30 7.12 -26.52 -0.19 -1.49 16 20 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 21 H 0.38 11.21 7.66 -40.82 -0.31 10.90 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.59 7.99 -51.93 -0.41 0.18 16 24 H 0.13 1.97 8.02 -52.48 -0.42 1.55 16 25 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -33.34 262.21 -7.37 -40.71 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -3.65 Total: 5.34 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.81 Total: -13.44 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.38 Total: -48.80 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.22 Total: -5.86 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.34 -7.37 -40.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692980732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.337 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds