Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.37972 * 119.87929 * 259.72606 * 11 10 9 13 13 C 1.38242 * 120.34901 * 179.81928 * 12 11 10 14 14 C 1.38385 * 119.76724 * 0.39403 * 13 12 11 15 15 C 1.37699 * 119.97882 * 359.68557 * 14 13 12 16 16 C 1.38918 * 120.78818 * 0.30025 * 15 14 13 17 17 O 1.36129 * 111.23385 * 179.29170 * 16 15 14 18 18 C 1.43772 * 109.25982 * 18.86322 * 17 16 15 19 19 C 1.51643 * 132.17907 * 180.54895 * 15 14 13 20 20 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 23 23 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 24 24 H 1.08004 * 119.82236 * 0.07535 * 12 11 10 25 25 H 1.07999 * 120.11040 * 180.12559 * 13 12 11 26 26 H 1.08002 * 120.01003 * 179.70184 * 14 13 12 27 27 H 1.09004 * 110.74301 * 90.65418 * 18 17 16 28 28 H 1.09002 * 110.74782 * 213.80978 * 18 17 16 29 29 H 1.08998 * 110.94025 * 46.11767 * 19 15 14 30 30 H 1.09007 * 110.96937 * 282.44300 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0784 -4.8023 0.0012 12 6 0.7943 -5.4631 1.1786 13 6 -0.1054 -6.5127 1.1910 14 6 -0.7174 -6.9069 0.0141 15 6 -0.4342 -6.2498 -1.1624 16 6 0.4678 -5.1935 -1.1875 17 8 0.6126 -4.6988 -2.4474 18 6 -0.5067 -5.1108 -3.2503 19 6 -0.9399 -6.4359 -2.5798 20 1 -0.4850 0.8401 0.0004 21 1 0.3554 -2.3881 0.0005 22 1 2.6845 -3.7147 -0.8894 23 1 2.6845 -3.7147 0.8905 24 1 1.2742 -5.1561 2.0961 25 1 -0.3264 -7.0259 2.1152 26 1 -1.4173 -7.7295 0.0185 27 1 -1.3083 -4.3736 -3.2024 28 1 -0.2002 -5.2792 -4.2827 29 1 -2.0244 -6.5441 -2.5954 30 1 -0.4582 -7.2895 -3.0569 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692980732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = -16.784054 kcal Electronic energy + Delta-G solvation = -14350.272560 eV Core-core repulsion = 11917.221456 eV Total energy + Delta-G solvation = -2433.051104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99236 -38.55773 -36.60255 -34.19110 -32.70027 -30.94036 -30.10472 -27.23328 -24.76248 -24.08570 -22.90869 -21.63012 -19.31123 -18.26338 -17.47459 -17.05379 -16.71871 -16.25198 -15.39972 -15.23004 -14.85541 -14.30510 -13.97010 -13.79278 -13.63327 -13.29794 -13.01245 -12.77196 -12.57045 -12.39704 -12.19651 -11.93770 -11.69685 -11.53925 -10.99511 -9.68855 -9.06416 -8.99559 -7.96426 -5.26920 0.36156 0.44859 1.44674 1.49542 1.55640 2.43790 2.54239 2.82259 3.35271 3.53022 3.68758 3.95879 4.11391 4.17986 4.21921 4.38827 4.48976 4.54046 4.61907 4.80927 4.86577 4.90916 4.94821 5.18607 5.43590 5.46620 5.50940 5.64829 5.81642 6.23468 6.31985 7.29450 8.01971 8.29694 9.27020 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.007675 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.675164 B = 3647.521893 C = 4046.147269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.196 3.804 11 C -0.133 4.133 12 C -0.084 4.084 13 C -0.146 4.146 14 C -0.071 4.071 15 C -0.189 4.189 16 C 0.091 3.909 17 O -0.333 6.333 18 C 0.037 3.963 19 C -0.095 4.095 20 H 0.252 0.748 21 H 0.371 0.629 22 H 0.012 0.988 23 H 0.034 0.966 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -16.492 -2.430 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.809 3.191 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.377 5.377 10 C 0.070 3.930 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.164 4.164 14 C -0.089 4.089 15 C -0.190 4.190 16 C 0.046 3.954 17 O -0.247 6.247 18 C -0.037 4.037 19 C -0.131 4.131 20 H 0.061 0.939 21 H 0.202 0.798 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.154 0.846 25 H 0.179 0.821 26 H 0.178 0.822 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.541 -16.245 -2.547 16.638 hybrid contribution 0.087 1.260 -0.135 1.270 sum -2.454 -14.985 -2.682 15.420 Atomic orbital electron populations 1.69847 1.06756 1.26229 1.59217 1.25660 0.96514 1.01293 1.03341 0.85108 0.77157 0.78557 0.78286 1.20467 1.21745 1.19983 1.19657 0.91545 0.85275 1.41862 0.90653 1.42491 1.05317 1.00588 1.89295 1.19542 0.92308 0.83415 0.97693 1.19505 1.02923 0.99465 0.91471 1.21043 0.97892 0.95406 0.95955 1.21383 0.97557 0.97920 0.99512 1.20691 0.98983 0.99310 0.89928 1.21234 1.01916 0.97983 0.97844 1.19717 0.96823 0.93470 0.85437 1.86858 1.45028 1.73758 1.19091 1.24132 0.87398 0.95738 0.96418 1.21804 1.03761 0.98027 0.89533 0.93917 0.79779 0.97020 0.94779 0.84599 0.82142 0.82237 0.91425 0.85290 0.86790 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.41 13.06 21.65 0.28 -62.13 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.25 -15.23 9.99 84.04 0.84 -14.39 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.73 -41.92 5.59 -347.15 -1.94 -43.86 16 10 C 0.20 9.31 6.35 85.63 0.54 9.85 16 11 C -0.13 -5.36 5.27 -19.68 -0.10 -5.46 16 12 C -0.08 -2.77 9.63 22.21 0.21 -2.56 16 13 C -0.15 -3.70 10.07 22.31 0.22 -3.48 16 14 C -0.07 -1.72 10.03 22.18 0.22 -1.50 16 15 C -0.19 -5.51 6.27 -19.53 -0.12 -5.64 16 16 C 0.09 3.51 6.76 22.68 0.15 3.66 16 17 O -0.33 -13.28 11.05 -95.01 -1.05 -14.33 16 18 C 0.04 1.02 8.01 72.56 0.58 1.60 16 19 C -0.09 -2.04 7.12 30.73 0.22 -1.82 16 20 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 21 H 0.37 22.66 7.66 -92.71 -0.71 21.95 16 22 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.03 1.54 7.99 -2.38 -0.02 1.52 16 24 H 0.14 4.10 8.02 -2.91 -0.02 4.08 16 25 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.13 2.64 8.14 -2.39 -0.02 2.63 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -74.36 262.21 2.99 -71.37 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.43 Total: 22.66 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.24 Total: -23.87 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -1.66 Total: -105.99 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.05 Total: -14.33 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -74.36 2.99 -71.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692980732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.587 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds