Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 119.54465 * 2 1 4 4 C 1.40034 * 118.97215 * 180.02562 * 3 2 1 5 5 C 1.47545 * 120.95066 * 180.02562 * 4 3 2 6 6 O 1.20834 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99985 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.47251 * 35.00104 * 7 5 4 9 9 C 1.52999 * 109.46809 * 275.00112 * 7 5 4 10 10 C 1.50701 * 109.46880 * 155.00283 * 7 5 4 11 11 H 1.07996 * 120.00416 * 359.97438 * 10 7 5 12 12 C 1.37881 * 119.99815 * 180.02562 * 10 7 5 13 13 N 1.31515 * 119.99660 * 359.97438 * 12 10 7 14 14 Si 1.86789 * 120.00048 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47454 * 59.99810 * 14 12 10 16 16 H 1.48501 * 109.47535 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47448 * 299.99730 * 14 12 10 18 18 C 1.40078 * 118.09952 * 0.02562 * 4 3 2 19 19 C 1.38097 * 118.97136 * 359.97182 * 18 4 3 20 20 N 1.31794 * 119.53567 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46678 * 270.02330 * 1 2 3 22 22 H 1.08994 * 109.47047 * 30.01549 * 1 2 3 23 23 H 1.08992 * 109.47575 * 150.02010 * 1 2 3 24 24 H 1.08004 * 120.51311 * 0.02562 * 3 2 1 25 25 H 1.08993 * 109.47330 * 59.99937 * 9 7 5 26 26 H 1.09002 * 109.47239 * 180.02562 * 9 7 5 27 27 H 1.09005 * 109.47020 * 299.99469 * 9 7 5 28 28 H 0.97008 * 119.99518 * 179.97438 * 13 12 10 29 29 H 1.08007 * 120.51166 * 180.02562 * 18 4 3 30 30 H 1.08007 * 119.53903 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2018 0.0000 4 6 3.5885 1.1878 -0.0005 5 6 4.3599 2.4455 0.0000 6 8 3.7837 3.5077 0.0014 7 6 5.8664 2.4055 -0.0012 8 1 6.2067 1.5549 -0.5916 9 6 6.3738 2.2649 1.4353 10 6 6.4022 3.6800 -0.6009 11 1 5.7202 4.4425 -0.9469 12 6 7.7633 3.8721 -0.7087 13 7 8.5938 2.9433 -0.2877 14 14 8.4276 5.4514 -1.4526 15 1 7.9643 6.6106 -0.6484 16 1 9.9121 5.4121 -1.4537 17 1 7.9346 5.5876 -2.8468 18 6 4.2359 -0.0544 -0.0016 19 6 3.4736 -1.2059 -0.0015 20 7 2.1567 -1.1467 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5140 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6491 2.1377 0.0004 25 1 5.9862 1.3432 1.8691 26 1 7.4635 2.2364 1.4346 27 1 6.0335 3.1156 2.0258 28 1 9.5514 3.0783 -0.3639 29 1 5.3145 -0.1106 -0.0017 30 1 3.9633 -2.1686 -0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703440025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -14.477725 kcal Electronic energy + Delta-G solvation = -14209.250421 eV Core-core repulsion = 11776.299327 eV Total energy + Delta-G solvation = -2432.951094 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19574 -38.28178 -33.97925 -32.91069 -32.12236 -30.43954 -27.48869 -25.25585 -24.89712 -22.56542 -21.73283 -18.71113 -16.75211 -16.42979 -15.69832 -15.23104 -14.84462 -14.48892 -14.05634 -13.61955 -13.36894 -13.21760 -12.52136 -12.33409 -12.23787 -11.60543 -11.44598 -11.08978 -10.79458 -10.77090 -10.34512 -10.12702 -9.55370 -9.50563 -9.08259 -8.77449 -8.62104 -8.37770 -6.10498 -4.15916 0.98348 1.28643 3.15165 3.30728 3.33958 3.38971 4.09306 4.35139 4.39665 4.63753 4.93421 5.21481 5.23809 5.32312 5.49874 5.57957 5.65277 5.83686 5.95818 6.12660 6.31810 6.51101 6.64717 6.79926 6.84493 6.90211 7.40186 7.69196 7.92055 8.08595 8.14393 8.48106 8.88507 9.49346 10.96374 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050921 B = 0.007037 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.738522 B = 3978.191717 C = 4288.941661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.109 3.891 3 C -0.128 4.128 4 C -0.106 4.106 5 C 0.398 3.602 6 O -0.451 6.451 7 C 0.007 3.993 8 H 0.054 0.946 9 C -0.129 4.129 10 C -0.511 4.511 11 H 0.067 0.933 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.129 4.129 19 C 0.088 3.912 20 N -0.478 5.478 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.140 0.860 25 H 0.015 0.985 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.151 0.849 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 -6.941 1.165 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.029 4.029 3 C -0.148 4.148 4 C -0.115 4.115 5 C 0.274 3.726 6 O -0.324 6.324 7 C -0.012 4.012 8 H 0.072 0.928 9 C -0.187 4.187 10 C -0.549 4.549 11 H 0.085 0.915 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.149 4.149 19 C -0.068 4.068 20 N -0.189 5.189 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.157 0.843 25 H 0.034 0.966 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.168 0.832 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.787 -7.155 1.181 12.180 hybrid contribution 1.024 1.471 -0.377 1.831 sum -8.763 -5.684 0.803 10.476 Atomic orbital electron populations 1.20671 0.88863 1.03281 1.02903 1.21191 0.96946 0.88165 0.96591 1.22282 0.94206 0.99567 0.98753 1.21666 0.94377 0.97172 0.98316 1.23458 0.93662 0.85579 0.69867 1.90254 1.73812 1.32911 1.35425 1.19152 0.85787 1.00119 0.96126 0.92809 1.21691 1.05132 0.96964 0.94946 1.21028 0.91852 1.01985 1.39999 0.91501 1.24929 0.96780 0.96917 0.95273 1.69848 1.02883 1.33544 1.46839 0.86520 0.77461 0.83470 0.79810 1.20106 1.21198 1.20167 1.22665 1.02577 0.92155 0.97489 1.22702 0.89091 0.98533 0.96491 1.67306 1.10541 1.29441 1.11655 0.90615 0.90778 0.90615 0.84256 0.96646 0.88544 0.94857 0.92726 0.83167 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.16 36.01 0.37 -0.71 16 2 C 0.11 1.61 6.78 -82.64 -0.56 1.05 16 3 C -0.13 -2.12 9.31 -38.94 -0.36 -2.49 16 4 C -0.11 -1.98 5.90 -104.74 -0.62 -2.60 16 5 C 0.40 8.93 6.24 -30.52 -0.19 8.74 16 6 O -0.45 -11.11 15.88 5.94 0.09 -11.02 16 7 C 0.01 0.17 1.97 -92.92 -0.18 -0.02 16 8 H 0.05 1.31 6.83 -51.93 -0.35 0.96 16 9 C -0.13 -2.99 8.95 37.16 0.33 -2.65 16 10 C -0.51 -14.14 8.33 -34.44 -0.29 -14.43 16 11 H 0.07 1.92 7.03 -52.49 -0.37 1.55 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 14 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.13 -2.10 9.45 -38.94 -0.37 -2.46 16 19 C 0.09 1.27 11.17 -17.61 -0.20 1.08 16 20 N -0.48 -7.34 10.24 -9.54 -0.10 -7.43 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.14 2.20 7.74 -52.48 -0.41 1.79 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.15 2.35 6.62 -52.48 -0.35 2.00 16 30 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 263.17 15.07 3.97 3.97 Total: -1.00 -29.99 263.17 -6.05 -36.04 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.46 Total: -1.09 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.16 Total: -12.89 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.53 Total: -31.32 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.99 -6.05 -36.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703440025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.563 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds