Wall clock time and date at job start Mon Mar 30 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38145 * 119.54465 * 2 1 4 4 C 1.40034 * 118.97215 * 180.02562 * 3 2 1 5 5 C 1.47545 * 120.95066 * 180.02562 * 4 3 2 6 6 O 1.20834 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99985 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.47251 * 35.00104 * 7 5 4 9 9 C 1.52999 * 109.46809 * 275.00112 * 7 5 4 10 10 C 1.50701 * 109.46880 * 155.00283 * 7 5 4 11 11 H 1.07996 * 120.00416 * 359.97438 * 10 7 5 12 12 C 1.37881 * 119.99815 * 180.02562 * 10 7 5 13 13 N 1.31515 * 119.99660 * 359.97438 * 12 10 7 14 14 Si 1.86789 * 120.00048 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47454 * 59.99810 * 14 12 10 16 16 H 1.48501 * 109.47535 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47448 * 299.99730 * 14 12 10 18 18 C 1.40078 * 118.09952 * 0.02562 * 4 3 2 19 19 C 1.38097 * 118.97136 * 359.97182 * 18 4 3 20 20 N 1.31794 * 119.53567 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46678 * 270.02330 * 1 2 3 22 22 H 1.08994 * 109.47047 * 30.01549 * 1 2 3 23 23 H 1.08992 * 109.47575 * 150.02010 * 1 2 3 24 24 H 1.08004 * 120.51311 * 0.02562 * 3 2 1 25 25 H 1.08993 * 109.47330 * 59.99937 * 9 7 5 26 26 H 1.09002 * 109.47239 * 180.02562 * 9 7 5 27 27 H 1.09005 * 109.47020 * 299.99469 * 9 7 5 28 28 H 0.97008 * 119.99518 * 179.97438 * 13 12 10 29 29 H 1.08007 * 120.51166 * 180.02562 * 18 4 3 30 30 H 1.08007 * 119.53903 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2018 0.0000 4 6 3.5885 1.1878 -0.0005 5 6 4.3599 2.4455 0.0000 6 8 3.7837 3.5077 0.0014 7 6 5.8664 2.4055 -0.0012 8 1 6.2067 1.5549 -0.5916 9 6 6.3738 2.2649 1.4353 10 6 6.4022 3.6800 -0.6009 11 1 5.7202 4.4425 -0.9469 12 6 7.7633 3.8721 -0.7087 13 7 8.5938 2.9433 -0.2877 14 14 8.4276 5.4514 -1.4526 15 1 7.9643 6.6106 -0.6484 16 1 9.9121 5.4121 -1.4537 17 1 7.9346 5.5876 -2.8468 18 6 4.2359 -0.0544 -0.0016 19 6 3.4736 -1.2059 -0.0015 20 7 2.1567 -1.1467 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5140 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6491 2.1377 0.0004 25 1 5.9862 1.3432 1.8691 26 1 7.4635 2.2364 1.4346 27 1 6.0335 3.1156 2.0258 28 1 9.5514 3.0783 -0.3639 29 1 5.3145 -0.1106 -0.0017 30 1 3.9633 -2.1686 -0.0019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703440025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:22 Heat of formation + Delta-G solvation = -32.230239 kcal Electronic energy + Delta-G solvation = -14210.020227 eV Core-core repulsion = 11776.299327 eV Total energy + Delta-G solvation = -2433.720901 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54414 -39.93358 -35.93552 -34.23906 -33.37257 -32.34367 -28.53470 -27.30829 -26.46709 -23.81958 -23.37148 -20.31746 -18.58410 -17.91128 -17.31063 -16.69066 -16.46101 -15.90832 -15.58103 -15.13772 -15.04876 -14.61199 -14.10532 -13.57660 -13.26772 -13.09047 -13.07784 -12.78259 -12.69631 -12.55573 -12.27572 -12.10484 -11.10890 -10.90006 -10.86647 -10.57758 -10.16891 -9.93646 -8.18516 -6.31085 -0.42571 0.09746 1.40082 1.41068 1.49000 1.56895 2.39166 2.80999 3.07021 3.12750 3.35372 3.77329 4.02046 4.06556 4.31262 4.49966 4.66525 4.70376 4.78755 4.80093 4.93236 4.98585 5.03302 5.15881 5.18972 5.45232 5.65397 5.67922 5.90182 6.16290 6.66833 6.76719 6.90234 7.36707 8.86568 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050921 B = 0.007037 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.738522 B = 3978.191717 C = 4288.941661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.112 3.888 3 C -0.136 4.136 4 C -0.130 4.130 5 C 0.401 3.599 6 O -0.485 6.485 7 C 0.001 3.999 8 H 0.052 0.948 9 C -0.118 4.118 10 C -0.540 4.540 11 H 0.045 0.955 12 C 0.024 3.976 13 N -0.907 5.907 14 Si 0.954 3.046 15 H -0.277 1.277 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.133 4.133 19 C 0.099 3.901 20 N -0.483 5.483 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.153 0.847 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 -8.273 1.134 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.025 4.025 3 C -0.156 4.156 4 C -0.139 4.139 5 C 0.280 3.720 6 O -0.361 6.361 7 C -0.018 4.018 8 H 0.069 0.931 9 C -0.176 4.176 10 C -0.577 4.577 11 H 0.064 0.936 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.780 3.220 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.153 4.153 19 C -0.057 4.057 20 N -0.195 5.195 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.159 0.841 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.545 -8.506 1.151 13.597 hybrid contribution 1.232 1.813 -0.364 2.222 sum -9.313 -6.693 0.787 11.496 Atomic orbital electron populations 1.20796 0.85896 1.04555 1.04312 1.21753 0.98835 0.87180 0.94725 1.22390 0.93395 1.00656 0.99127 1.21336 0.95197 0.95975 1.01352 1.23416 0.93129 0.86774 0.68668 1.90227 1.74064 1.34460 1.37343 1.19135 0.87625 0.98541 0.96473 0.93060 1.21520 1.03761 0.98019 0.94304 1.21230 0.92235 1.03077 1.41204 0.93646 1.25578 0.96849 0.99683 0.95516 1.69923 1.03123 1.34610 1.46862 0.85670 0.77405 0.79983 0.78975 1.20292 1.19840 1.19907 1.22746 1.02895 0.91920 0.97708 1.23261 0.88806 0.99302 0.94360 1.67473 1.10920 1.29465 1.11593 0.88980 0.89360 0.89525 0.84109 0.93447 0.90453 0.96093 0.92393 0.82945 0.78643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.16 71.24 0.72 -1.09 16 2 C 0.11 3.05 6.78 42.54 0.29 3.34 16 3 C -0.14 -4.36 9.31 22.68 0.21 -4.15 16 4 C -0.13 -4.78 5.90 -19.94 -0.12 -4.90 16 5 C 0.40 18.36 6.24 28.14 0.18 18.53 16 6 O -0.49 -24.69 15.88 -1.67 -0.03 -24.72 16 7 C 0.00 0.05 1.97 -12.29 -0.02 0.03 16 8 H 0.05 2.55 6.83 -2.39 -0.02 2.53 16 9 C -0.12 -5.49 8.95 71.98 0.64 -4.85 16 10 C -0.54 -30.63 8.33 25.60 0.21 -30.42 16 11 H 0.05 2.71 7.03 -2.91 -0.02 2.69 16 12 C 0.02 1.30 5.30 84.66 0.45 1.75 16 13 N -0.91 -49.92 11.32 21.45 0.24 -49.68 16 14 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 C -0.13 -4.12 9.45 22.68 0.21 -3.91 16 19 C 0.10 2.56 11.17 84.66 0.95 3.51 16 20 N -0.48 -13.38 10.24 -184.08 -1.89 -15.27 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 22 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.14 4.39 7.74 -2.91 -0.02 4.36 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 3.90 6.07 -2.39 -0.01 3.88 16 27 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 29 H 0.15 4.59 6.62 -2.91 -0.02 4.57 16 30 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -64.47 263.17 5.22 -59.25 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.14 Total: 6.60 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.72 Total: -22.15 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -1.64 Total: -64.95 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.03 Total: -24.72 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.47 5.22 -59.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703440025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.020 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds