Wall clock time and date at job start Mon Mar 30 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47408 * 23.66821 * 3 2 1 5 5 C 1.37093 * 119.99993 * 264.34794 * 4 3 2 6 6 H 1.07994 * 120.00473 * 196.23189 * 5 4 3 7 7 C 1.38955 * 120.00157 * 16.23259 * 5 4 3 8 8 N 1.31417 * 119.99739 * 21.28896 * 7 5 4 9 9 Si 1.86793 * 120.00284 * 201.29187 * 7 5 4 10 10 H 1.48493 * 109.47659 * 84.89210 * 9 7 5 11 11 H 1.48504 * 109.47126 * 204.89490 * 9 7 5 12 12 H 1.48505 * 109.46742 * 324.89094 * 9 7 5 13 13 C 1.34775 * 120.00102 * 84.34228 * 4 3 2 14 14 O 1.21290 * 120.00288 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99797 * 0.02562 * 13 4 3 16 16 H 1.08999 * 115.55910 * 325.69530 * 15 13 4 17 17 C 1.52996 * 117.50235 * 111.38778 * 15 13 4 18 18 C 1.52989 * 117.49571 * 180.02562 * 15 13 4 19 19 C 1.53000 * 138.58722 * 121.61536 * 18 15 13 20 20 C 1.52997 * 138.58983 * 23.40816 * 18 15 13 21 21 H 4.40651 * 5.51383 * 179.97438 * 4 1 2 22 22 H 1.09000 * 109.47289 * 263.66289 * 3 2 1 23 23 H 1.08996 * 109.46919 * 143.66849 * 3 2 1 24 24 H 0.97004 * 119.99552 * 180.02562 * 8 7 5 25 25 H 1.08994 * 117.50059 * 214.97872 * 17 15 13 26 26 H 1.08999 * 117.49788 * 0.02562 * 17 15 13 27 27 H 1.09003 * 117.50198 * 336.59708 * 19 18 15 28 28 H 1.08997 * 117.50031 * 121.61517 * 19 18 15 29 29 H 1.09008 * 117.49565 * 238.37795 * 20 18 15 30 30 H 1.08996 * 117.50206 * 23.37267 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2642 -0.5545 5 6 3.4741 -2.2945 0.2839 6 1 4.0708 -3.1160 -0.0841 7 6 3.0503 -2.2819 1.6071 8 7 2.0159 -1.5514 1.9588 9 14 3.9507 -3.3029 2.8861 10 1 5.1162 -2.5388 3.3988 11 1 3.0300 -3.6139 4.0090 12 1 4.4217 -4.5681 2.2673 13 6 3.2512 -1.4149 -1.8887 14 8 3.6556 -2.4622 -2.3478 15 6 2.8787 -0.2821 -2.8102 16 1 2.0457 0.3385 -2.4798 17 6 4.0095 0.4043 -3.5790 18 6 3.0323 -0.5155 -4.3144 19 6 2.1633 -0.4946 -5.5735 20 6 3.0777 -1.6892 -5.2947 21 1 -1.0499 -0.0004 0.0000 22 1 3.0093 0.1143 1.0214 23 1 3.0089 0.8287 -0.6088 24 1 1.7203 -1.5423 2.8826 25 1 3.9205 1.4764 -3.7543 26 1 5.0228 0.0363 -3.4186 27 1 1.0907 -0.6415 -5.4472 28 1 2.4538 0.1854 -6.3742 29 1 3.9698 -1.7951 -5.9122 30 1 2.6069 -2.6222 -4.9849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705149693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:25 Heat of formation + Delta-G solvation = 77.179986 kcal Electronic energy + Delta-G solvation = -14524.141380 eV Core-core repulsion = 12095.164863 eV Total energy + Delta-G solvation = -2428.976517 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79904 -38.52118 -36.90561 -34.14322 -33.28869 -32.97805 -28.38091 -27.01136 -24.35697 -23.24532 -21.22670 -19.80547 -19.44781 -18.46230 -17.95055 -16.61958 -16.22089 -15.90617 -15.75041 -15.45850 -14.87270 -14.16179 -14.02220 -13.53418 -13.26660 -12.82130 -12.57142 -12.47633 -12.32249 -12.18513 -11.22907 -11.13337 -11.04582 -10.90777 -10.81447 -10.64154 -10.26152 -9.84109 -8.33265 -5.93078 1.34965 1.41009 1.51856 1.78681 2.09535 2.31385 2.36852 2.72655 2.78809 3.07941 3.29878 3.50209 3.88268 3.93792 3.99690 4.32570 4.56366 4.65902 4.73574 4.76428 4.80355 4.85358 4.98014 5.03855 5.11552 5.30842 5.41340 5.45579 6.05374 6.45338 7.12013 7.14521 7.42555 8.01360 8.65374 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034996 B = 0.009222 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.910526 B = 3035.395134 C = 3511.359387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.154 4.154 3 C 0.235 3.765 4 N -0.451 5.451 5 C -0.354 4.354 6 H 0.073 0.927 7 C 0.002 3.998 8 N -0.872 5.872 9 Si 0.986 3.014 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.465 3.535 14 O -0.626 6.626 15 C -0.144 4.144 16 H 0.121 0.879 17 C -0.082 4.082 18 C -0.228 4.228 19 C -0.098 4.098 20 C -0.133 4.133 21 H 0.234 0.766 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.272 0.728 25 H 0.139 0.861 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 7.916 -6.912 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.113 3.887 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.809 3.191 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.256 3.744 14 O -0.513 6.513 15 C -0.165 4.165 16 H 0.139 0.861 17 C -0.120 4.120 18 C -0.229 4.229 19 C -0.134 4.134 20 C -0.170 4.170 21 H 0.250 0.750 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.082 0.918 25 H 0.157 0.843 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.125 0.875 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.266 7.445 -6.911 10.162 hybrid contribution -0.025 -0.990 1.131 1.503 sum -0.290 6.456 -5.780 8.670 Atomic orbital electron populations 1.25158 0.96379 1.01466 1.03606 1.23522 0.95075 0.99053 0.97880 1.18331 0.84512 0.85355 1.00505 1.43852 1.55982 1.12726 1.04264 1.19565 1.32744 1.03790 0.92005 0.90933 1.25981 0.95499 0.99179 0.99482 1.70190 1.20701 1.40969 1.19064 0.85075 0.78428 0.78266 0.77282 1.18816 1.20058 1.20505 1.20129 0.82838 0.88830 0.82626 1.90453 1.52983 1.31535 1.76313 1.21839 1.03677 0.99714 0.91247 0.86094 1.22726 0.93157 0.98759 0.97321 1.21444 1.06576 1.05249 0.89637 1.22849 0.96726 0.99491 0.94335 1.22539 1.02321 0.92269 0.99844 0.74979 0.88746 0.88587 0.91756 0.84309 0.89486 0.88412 0.85257 0.87489 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.93 10.80 31.13 0.34 -6.59 16 3 C 0.24 10.68 4.80 84.57 0.41 11.08 16 4 N -0.45 -23.98 2.60 -645.42 -1.68 -25.65 16 5 C -0.35 -20.54 9.35 84.04 0.79 -19.76 16 6 H 0.07 4.56 7.37 -2.91 -0.02 4.53 16 7 C 0.00 0.10 4.89 84.93 0.42 0.52 16 8 N -0.87 -46.17 9.42 21.67 0.20 -45.96 16 9 Si 0.99 42.80 29.60 68.60 2.03 44.83 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.47 24.10 7.35 87.66 0.64 24.74 16 14 O -0.63 -37.21 15.88 -3.06 -0.05 -37.26 16 15 C -0.14 -5.63 4.81 -11.54 -0.06 -5.68 16 16 H 0.12 4.45 6.73 -2.39 -0.02 4.44 16 17 C -0.08 -2.52 10.24 30.60 0.31 -2.20 16 18 C -0.23 -7.70 5.06 -52.18 -0.26 -7.96 16 19 C -0.10 -2.46 10.53 30.59 0.32 -2.14 16 20 C -0.13 -4.29 10.16 30.59 0.31 -3.98 16 21 H 0.23 7.30 7.80 -4.42 -0.03 7.26 16 22 H 0.09 4.53 6.35 -2.39 -0.02 4.51 16 23 H 0.10 3.59 6.97 -2.39 -0.02 3.57 16 24 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 25 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -70.32 268.43 6.28 -64.04 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.13 Total: 20.59 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.65 Total: -20.58 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.47 Total: -71.62 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.05 Total: -37.26 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.32 6.28 -64.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.220 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds