Wall clock time and date at job start Mon Mar 30 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47142 * 323.62010 * 3 2 1 5 5 C 1.37106 * 119.99769 * 264.07056 * 4 3 2 6 6 H 1.08000 * 119.99690 * 198.70784 * 5 4 3 7 7 C 1.38954 * 120.00018 * 18.70697 * 5 4 3 8 8 N 1.31406 * 119.99769 * 20.47035 * 7 5 4 9 9 Si 1.86796 * 119.99871 * 200.47567 * 7 5 4 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47234 * 119.99736 * 9 7 5 12 12 H 1.48505 * 109.46961 * 239.99869 * 9 7 5 13 13 C 1.34772 * 120.00286 * 84.06857 * 4 3 2 14 14 O 1.21290 * 119.99684 * 0.02562 * 13 4 3 15 15 C 1.50699 * 120.00286 * 179.97438 * 13 4 3 16 16 H 1.09006 * 115.54415 * 34.33296 * 15 13 4 17 17 C 1.52999 * 117.52234 * 248.63109 * 15 13 4 18 18 C 1.52991 * 117.50081 * 179.97438 * 15 13 4 19 19 C 1.52989 * 138.59130 * 238.40445 * 18 15 13 20 20 C 1.53005 * 60.03094 * 130.88774 * 19 18 15 21 21 H 4.40643 * 5.51416 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.46971 * 203.62063 * 3 2 1 23 23 H 1.08996 * 109.47253 * 83.61548 * 3 2 1 24 24 H 0.97001 * 119.99810 * 180.02562 * 8 7 5 25 25 H 1.08997 * 117.49828 * 145.02838 * 17 15 13 26 26 H 1.08994 * 117.49803 * 0.02562 * 17 15 13 27 27 H 1.09004 * 117.50220 * 238.38566 * 19 18 15 28 28 H 1.09006 * 117.49958 * 23.38691 * 19 18 15 29 29 H 1.08997 * 117.50220 * 107.50436 * 20 19 18 30 30 H 1.09001 * 117.49517 * 252.52702 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1112 0.8193 5 6 3.4789 -0.8979 2.1292 6 1 4.1087 -1.6080 2.6445 7 6 3.0173 0.2318 2.7937 8 7 1.9628 0.8739 2.3435 9 14 3.8958 0.8378 4.3268 10 1 5.0454 -0.0542 4.6237 11 1 4.3870 2.2209 4.1017 12 1 2.9529 0.8278 5.4741 13 6 3.2463 -2.3436 0.2853 14 8 2.9423 -2.5321 -0.8736 15 6 3.7497 -3.4871 1.1279 16 1 3.4657 -3.4565 2.1799 17 6 5.1223 -4.0685 0.7833 18 6 3.8530 -4.8617 0.4642 19 6 3.3035 -6.2757 0.6621 20 6 3.2364 -5.6157 -0.7166 21 1 -1.0499 -0.0001 0.0003 22 1 3.0089 0.9424 0.4118 23 1 3.0094 -0.1135 -1.0212 24 1 1.6408 1.6627 2.8072 25 1 5.7415 -4.4203 1.6085 26 1 5.6618 -3.6236 -0.0527 27 1 4.0247 -7.0813 0.7999 28 1 2.3705 -6.3801 1.2161 29 1 3.9134 -5.9870 -1.4859 30 1 2.2593 -5.2855 -1.0695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705149695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:28 Heat of formation + Delta-G solvation = 76.867024 kcal Electronic energy + Delta-G solvation = -14508.949168 eV Core-core repulsion = 12079.959080 eV Total energy + Delta-G solvation = -2428.990088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78975 -38.54126 -36.80583 -33.90178 -33.56112 -32.92172 -28.63337 -26.76608 -24.16513 -23.22765 -21.19858 -20.35699 -19.20631 -18.29179 -17.93744 -16.38194 -16.26572 -15.89955 -15.77918 -15.37543 -15.00052 -14.18995 -13.86430 -13.63860 -13.11477 -12.79571 -12.63435 -12.40676 -12.27510 -12.05946 -11.25087 -11.23338 -11.01733 -10.87439 -10.79072 -10.62179 -10.25021 -9.84310 -8.26559 -5.90776 1.39658 1.49751 1.62280 1.78755 2.06306 2.32414 2.39667 2.74918 2.86727 3.10698 3.29051 3.54277 3.89374 4.02261 4.07212 4.47452 4.60866 4.70074 4.77398 4.82755 4.82975 4.89661 4.91961 5.05140 5.19033 5.32290 5.36121 5.47414 5.78067 6.39876 7.09756 7.12479 7.55271 7.96269 8.73244 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.010428 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.173603 B = 2684.506579 C = 3409.806539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.146 4.146 3 C 0.244 3.756 4 N -0.448 5.448 5 C -0.359 4.359 6 H 0.112 0.888 7 C -0.005 4.005 8 N -0.880 5.880 9 Si 0.989 3.011 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.285 1.285 13 C 0.475 3.525 14 O -0.629 6.629 15 C -0.132 4.132 16 H 0.117 0.883 17 C -0.084 4.084 18 C -0.230 4.230 19 C -0.103 4.103 20 C -0.128 4.128 21 H 0.235 0.765 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.269 0.731 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -6.842 1.207 8.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.147 4.147 3 C 0.121 3.879 4 N -0.164 5.164 5 C -0.486 4.486 6 H 0.130 0.870 7 C -0.208 4.208 8 N -0.516 5.516 9 Si 0.813 3.187 10 H -0.178 1.178 11 H -0.205 1.205 12 H -0.211 1.211 13 C 0.265 3.735 14 O -0.518 6.518 15 C -0.153 4.153 16 H 0.135 0.865 17 C -0.121 4.121 18 C -0.230 4.230 19 C -0.139 4.139 20 C -0.164 4.164 21 H 0.252 0.748 22 H 0.114 0.886 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.106 0.894 27 H 0.145 0.855 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.996 -6.723 0.708 7.853 hybrid contribution -0.342 0.959 0.674 1.221 sum 3.654 -5.764 1.382 6.963 Atomic orbital electron populations 1.25112 0.96371 1.01792 1.04434 1.23548 0.95224 0.99040 0.96898 1.17949 0.84614 0.91794 0.93533 1.43881 1.55680 1.05716 1.11171 1.20030 1.30991 1.10309 0.87278 0.87015 1.26175 0.95146 0.97427 1.02081 1.70246 1.20072 1.19428 1.41897 0.84940 0.78480 0.78326 0.76985 1.17825 1.20464 1.21138 1.20073 0.82268 0.83643 0.87477 1.90483 1.57211 1.84240 1.19822 1.21684 1.03726 0.90811 0.99089 0.86496 1.22646 0.88225 0.98483 1.02744 1.21497 1.02865 0.91867 1.06802 1.22843 1.02197 0.91117 0.97747 1.22544 1.01063 1.01109 0.91727 0.74837 0.88630 0.91881 0.92101 0.85176 0.89437 0.85509 0.88515 0.87437 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.07 19.25 74.32 1.43 -10.64 16 2 C -0.15 -7.56 11.49 31.12 0.36 -7.20 16 3 C 0.24 12.58 5.06 84.57 0.43 13.01 16 4 N -0.45 -23.43 2.60 -645.42 -1.68 -25.11 16 5 C -0.36 -18.18 8.97 84.04 0.75 -17.43 16 6 H 0.11 5.27 6.47 -2.91 -0.02 5.26 16 7 C 0.00 -0.25 4.88 84.93 0.41 0.17 16 8 N -0.88 -46.22 9.46 21.66 0.20 -46.02 16 9 Si 0.99 38.95 29.60 68.60 2.03 40.98 16 10 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 11 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.47 24.18 7.35 87.66 0.64 24.83 16 14 O -0.63 -34.97 15.93 -3.06 -0.05 -35.02 16 15 C -0.13 -5.48 4.96 -11.54 -0.06 -5.53 16 16 H 0.12 4.80 7.12 -2.38 -0.02 4.78 16 17 C -0.08 -2.74 10.24 30.61 0.31 -2.43 16 18 C -0.23 -7.98 5.06 -52.15 -0.26 -8.24 16 19 C -0.10 -2.69 10.53 30.59 0.32 -2.37 16 20 C -0.13 -4.10 10.17 30.62 0.31 -3.79 16 21 H 0.24 8.55 7.80 -4.42 -0.03 8.52 16 22 H 0.10 4.96 6.50 -2.39 -0.02 4.94 16 23 H 0.06 3.17 7.61 -2.39 -0.02 3.15 16 24 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 25 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 26 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.52 269.53 6.29 -58.23 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.13 Total: 26.56 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.66 Total: -19.62 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.47 Total: -71.13 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.05 Total: -35.02 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -64.52 6.29 -58.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.094 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds