Wall clock time and date at job start Mon Mar 30 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86793 * 120.00366 * 2 1 4 4 H 1.48494 * 109.47058 * 239.99898 * 3 2 1 5 5 H 1.48503 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47067 * 119.99811 * 3 2 1 7 7 C 1.39942 * 119.99455 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99706 * 197.75050 * 7 2 1 9 9 C 1.41151 * 120.00203 * 17.75385 * 7 2 1 10 10 C 1.40604 * 120.18131 * 24.86143 * 9 7 2 11 11 C 1.36487 * 119.80934 * 179.88793 * 10 9 7 12 12 C 1.38669 * 120.45001 * 359.65577 * 11 10 9 13 13 C 1.38683 * 120.84321 * 0.62132 * 12 11 10 14 14 C 1.38071 * 119.87075 * 359.55452 * 13 12 11 15 15 O 1.35505 * 121.97801 * 179.97438 * 14 13 12 16 16 C 1.42852 * 117.88692 * 17.09365 * 15 14 13 17 17 C 1.53412 * 108.34187 * 310.92605 * 16 15 14 18 18 H 1.08992 * 109.70370 * 304.87977 * 17 16 15 19 19 N 1.46907 * 109.69572 * 184.28163 * 17 16 15 20 20 C 1.50785 * 118.76550 * 179.83650 * 13 12 11 21 21 H 0.97009 * 119.99903 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.09011 * 359.86595 * 10 9 7 23 23 H 1.08005 * 119.77212 * 179.97438 * 11 10 9 24 24 H 1.07996 * 119.57937 * 180.31096 * 12 11 10 25 25 H 1.08998 * 109.68652 * 191.21010 * 16 15 14 26 26 H 1.09000 * 109.68552 * 70.63745 * 16 15 14 27 27 H 1.00901 * 110.99474 * 61.16377 * 19 17 16 28 28 H 1.00897 * 111.00151 * 185.11421 * 19 17 16 29 29 H 1.09006 * 109.43603 * 317.47517 * 20 13 12 30 30 H 1.08999 * 109.43977 * 77.34980 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6962 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6962 1.2126 7 6 2.0082 -1.2120 0.0005 8 1 3.0497 -1.2342 0.2857 9 6 1.3528 -2.4054 -0.3717 10 6 0.2273 -2.3609 -1.2132 11 6 -0.3993 -3.5197 -1.5701 12 6 0.0709 -4.7420 -1.1143 13 6 1.1756 -4.8122 -0.2788 14 6 1.8257 -3.6546 0.1002 15 8 2.9083 -3.6734 0.9149 16 6 3.5965 -4.9139 1.0831 17 6 2.5621 -6.0000 1.4057 18 1 1.9734 -5.7008 2.2728 19 7 3.2474 -7.2689 1.6855 20 6 1.6446 -6.1657 0.1919 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1405 -1.4124 -1.5757 23 1 -1.2641 -3.4848 -2.2162 24 1 -0.4327 -5.6506 -1.4096 25 1 4.3093 -4.8302 1.9034 26 1 4.1227 -5.1695 0.1633 27 1 3.8583 -7.1815 2.4838 28 1 2.5834 -8.0168 1.8186 29 1 0.7822 -6.7723 0.4687 30 1 2.1919 -6.6595 -0.6111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713733840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:55 Heat of formation + Delta-G solvation = -26.366112 kcal Electronic energy + Delta-G solvation = -14665.860317 eV Core-core repulsion = 12232.393704 eV Total energy + Delta-G solvation = -2433.466613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42411 -36.36012 -34.92483 -33.61563 -30.81027 -29.37923 -27.70547 -25.18426 -24.83013 -21.79056 -20.69515 -18.99866 -17.03234 -16.63798 -15.70760 -15.51497 -14.76015 -14.61946 -13.75030 -13.66727 -13.11199 -12.75352 -12.37428 -12.30264 -11.98456 -11.45166 -11.22652 -10.98732 -10.71366 -10.42680 -10.19466 -9.96458 -9.58171 -9.28329 -9.08374 -8.65029 -7.32795 -6.95949 -6.65193 -4.21691 2.78051 2.95764 3.10443 3.14146 3.24787 3.98872 4.34213 4.63571 4.80470 5.13619 5.26021 5.58968 5.66959 6.00871 6.01831 6.09984 6.21166 6.41596 6.42680 6.52807 7.03785 7.09576 7.20993 7.33305 7.41085 7.47204 7.77801 7.81910 8.10188 8.24578 8.48194 8.74975 8.89070 9.13944 10.24553 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036591 B = 0.009517 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.026362 B = 2941.523724 C = 3589.671958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.445 4.445 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.152 4.152 11 C -0.120 4.120 12 C -0.216 4.216 13 C -0.134 4.134 14 C 0.013 3.987 15 O -0.306 6.306 16 C 0.072 3.928 17 C 0.053 3.947 18 H 0.045 0.955 19 N -0.843 5.843 20 C -0.060 4.060 21 H 0.280 0.720 22 H 0.123 0.877 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.339 0.661 28 H 0.341 0.659 29 H 0.061 0.939 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -6.421 1.831 7.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.474 4.474 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.172 4.172 11 C -0.139 4.139 12 C -0.236 4.236 13 C -0.135 4.135 14 C -0.032 4.032 15 O -0.219 6.219 16 C -0.005 4.005 17 C -0.058 4.058 18 H 0.063 0.937 19 N -0.373 5.373 20 C -0.098 4.098 21 H 0.091 0.909 22 H 0.141 0.859 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.176 -5.979 1.224 6.880 hybrid contribution -0.317 0.439 0.920 1.067 sum 2.859 -5.540 2.144 6.593 Atomic orbital electron populations 1.69842 1.07543 1.29200 1.35660 1.25910 0.94719 1.01272 0.92486 0.86347 0.80103 0.80154 0.79995 1.18853 1.20424 1.19017 1.19403 0.98294 0.90715 1.39022 0.90009 1.17204 0.92756 0.89883 0.90519 1.20844 0.98484 0.97271 1.00606 1.20329 0.99314 0.93183 1.01042 1.20022 1.00478 0.96284 1.06813 1.19188 0.99017 0.92222 1.03107 1.18887 0.91343 0.93840 0.99083 1.85938 1.41340 1.30612 1.64049 1.22597 0.93142 0.83701 1.01022 1.22005 0.95636 0.90183 0.97962 0.93682 1.58689 1.25352 1.06341 1.46952 1.20337 0.97574 0.95558 0.96307 0.90913 0.85915 0.89287 0.89390 0.89538 0.92601 0.84932 0.84698 0.91994 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.97 10.97 55.55 0.61 -20.36 16 2 C 0.07 1.88 5.13 -17.33 -0.09 1.79 16 3 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.44 -12.27 8.67 -37.84 -0.33 -12.60 16 8 H 0.08 2.23 7.59 -52.49 -0.40 1.84 16 9 C 0.10 2.74 5.59 -106.59 -0.60 2.15 16 10 C -0.15 -4.05 8.64 -39.32 -0.34 -4.39 16 11 C -0.12 -2.88 9.97 -40.05 -0.40 -3.28 16 12 C -0.22 -4.96 9.67 -39.26 -0.38 -5.34 16 13 C -0.13 -3.09 5.75 -104.48 -0.60 -3.69 16 14 C 0.01 0.33 6.51 -38.34 -0.25 0.08 16 15 O -0.31 -7.31 9.44 -18.21 -0.17 -7.48 16 16 C 0.07 1.33 6.63 37.37 0.25 1.58 16 17 C 0.05 0.89 3.48 -67.46 -0.23 0.66 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 19 N -0.84 -10.76 9.26 -4.46 -0.04 -10.81 16 20 C -0.06 -1.11 5.42 -27.81 -0.15 -1.26 16 21 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 22 H 0.12 3.32 6.16 -52.49 -0.32 3.00 16 23 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.34 3.62 9.05 -39.29 -0.36 3.26 16 28 H 0.34 3.74 9.00 -39.29 -0.35 3.39 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 252.96 15.07 3.81 3.81 Total: -1.00 -29.00 252.96 -7.47 -36.46 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.52 Total: 8.50 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.12 Total: -24.31 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.57 Total: -31.17 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.17 Total: -7.48 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.00 -7.47 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713733840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.098 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds