Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86798 * 120.00269 * 2 1 4 4 H 1.48503 * 109.47095 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47381 * 119.99616 * 3 2 1 7 7 C 1.39948 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 161.35216 * 7 2 1 9 9 C 1.41395 * 120.00064 * 341.35508 * 7 2 1 10 10 C 1.40738 * 120.31529 * 336.29120 * 9 7 2 11 11 C 1.37410 * 119.60111 * 179.77756 * 10 9 7 12 12 C 1.39067 * 120.63334 * 0.03723 * 11 10 9 13 13 C 1.38383 * 120.25647 * 0.17155 * 12 11 10 14 14 C 1.38049 * 120.02860 * 359.80871 * 13 12 11 15 15 C 1.50713 * 121.46388 * 179.62677 * 13 12 11 16 16 O 1.42704 * 110.26937 * 16.05676 * 15 13 12 17 17 C 1.43207 * 113.11886 * 308.15808 * 16 15 13 18 18 C 1.50834 * 118.53140 * 180.29741 * 12 11 10 19 19 H 1.08995 * 109.36841 * 76.88004 * 18 12 11 20 20 N 1.46902 * 109.41676 * 317.04167 * 18 12 11 21 21 H 0.97002 * 120.00160 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.20243 * 359.74989 * 10 9 7 23 23 H 1.08006 * 119.68581 * 180.02562 * 11 10 9 24 24 H 1.07994 * 119.94412 * 179.72210 * 14 13 12 25 25 H 1.08993 * 109.33972 * 136.30159 * 15 13 12 26 26 H 1.08997 * 109.33513 * 255.81703 * 15 13 12 27 27 H 1.08997 * 109.63686 * 190.56972 * 17 16 15 28 28 H 1.09004 * 109.63328 * 311.17684 * 17 16 15 29 29 H 1.00907 * 110.99975 * 179.68445 * 20 18 12 30 30 H 1.00902 * 111.00214 * 303.63532 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0455 -1.2367 -0.2985 9 6 1.3566 -2.4042 0.3926 10 6 0.2266 -2.3540 1.2299 11 6 -0.3978 -3.5214 1.5981 12 6 0.0769 -4.7501 1.1519 13 6 1.1898 -4.8115 0.3317 14 6 1.8315 -3.6504 -0.0502 15 6 1.7323 -6.1285 -0.1608 16 8 0.7622 -7.1600 0.0161 17 6 0.2438 -7.2217 1.3496 18 6 -0.6488 -6.0012 1.5797 19 1 -1.5634 -6.1060 0.9961 20 7 -0.9877 -5.9058 3.0059 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1474 -1.4038 1.5814 23 1 -1.2653 -3.4845 2.2403 24 1 2.7025 -3.7002 -0.6866 25 1 1.9802 -6.0438 -1.2188 26 1 2.6328 -6.3801 0.3995 27 1 -0.3421 -8.1325 1.4731 28 1 1.0674 -7.2128 2.0636 29 1 -1.4797 -6.7302 3.3166 30 1 -0.1624 -5.7455 3.5637 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713735835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -52.914266 kcal Electronic energy + Delta-G solvation = -14541.682251 eV Core-core repulsion = 12107.064424 eV Total energy + Delta-G solvation = -2434.617827 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83000 -38.32023 -36.08478 -35.19786 -32.03763 -31.44375 -29.00707 -27.36604 -25.82892 -23.63559 -22.33254 -20.97969 -19.00733 -17.65405 -17.43504 -16.81810 -16.63043 -16.17026 -15.45014 -15.31116 -14.67767 -14.14805 -14.09769 -13.86403 -13.42343 -13.02840 -12.98326 -12.77678 -12.64534 -12.03022 -12.01511 -11.51851 -11.20304 -11.00644 -10.86306 -9.49158 -9.27383 -9.12272 -8.65064 -6.35408 0.92981 1.05498 1.36798 1.48165 1.52514 2.19335 2.67522 2.93337 3.63859 3.82797 3.99609 4.03814 4.15660 4.35280 4.45054 4.49619 4.70740 4.79462 4.99561 5.09329 5.13437 5.30969 5.47138 5.67592 5.87853 5.97056 6.07998 6.20102 6.37804 6.40273 6.68918 6.73220 6.92188 7.02203 8.31208 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050342 B = 0.007843 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.062502 B = 3569.383530 C = 3973.208473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.194 4.194 11 C -0.078 4.078 12 C -0.206 4.206 13 C -0.096 4.096 14 C -0.242 4.242 15 C 0.110 3.890 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.126 3.874 19 H 0.071 0.929 20 N -0.835 5.835 21 H 0.288 0.712 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.352 0.648 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -8.009 3.535 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.214 4.214 11 C -0.096 4.096 12 C -0.208 4.208 13 C -0.097 4.097 14 C -0.262 4.262 15 C 0.034 3.966 16 O -0.309 6.309 17 C -0.044 4.044 18 C 0.014 3.986 19 H 0.089 0.911 20 N -0.367 5.367 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.166 0.834 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.399 -7.368 3.148 8.022 hybrid contribution 0.862 0.462 0.146 0.989 sum 1.261 -6.906 3.295 7.755 Atomic orbital electron populations 1.69888 1.09135 1.30680 1.35278 1.26798 0.95457 1.04647 0.91131 0.85246 0.78792 0.75523 0.80106 1.18236 1.19163 1.18467 1.19821 0.98735 0.92676 1.41907 0.90536 1.17903 0.91813 0.93049 0.89183 1.21309 1.00493 0.97114 1.02452 1.20752 0.98412 0.92029 0.98433 1.19144 1.00010 0.94419 1.07182 1.20102 0.96046 0.95421 0.98089 1.20929 1.04633 0.92310 1.08282 1.21404 0.90234 0.83161 1.01808 1.87940 1.59218 1.53094 1.30658 1.23642 0.97385 0.99350 0.84051 1.20456 0.96612 0.91535 0.89960 0.91076 1.58750 1.30356 1.45606 1.02021 0.90101 0.88357 0.87563 0.88217 0.87796 0.91157 0.86521 0.92545 0.83373 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.26 10.97 21.83 0.24 -44.02 16 2 C 0.03 1.79 5.13 85.26 0.44 2.23 16 3 Si 0.98 38.71 29.60 68.60 2.03 40.74 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.65 9.06 23.46 0.21 -27.43 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.08 4.59 5.57 -21.34 -0.12 4.47 16 10 C -0.19 -10.61 8.70 22.69 0.20 -10.41 16 11 C -0.08 -3.75 9.24 22.27 0.21 -3.55 16 12 C -0.21 -8.97 5.54 -19.59 -0.11 -9.07 16 13 C -0.10 -4.22 5.80 -19.87 -0.12 -4.33 16 14 C -0.24 -12.04 9.40 22.78 0.21 -11.82 16 15 C 0.11 3.86 6.64 71.24 0.47 4.34 16 16 O -0.39 -13.23 10.80 -148.98 -1.61 -14.84 16 17 C 0.03 0.96 6.41 71.96 0.46 1.42 16 18 C 0.13 4.20 3.52 44.19 0.16 4.35 16 19 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 20 N -0.84 -23.12 8.48 -171.71 -1.46 -24.57 16 21 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 22 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 23 H 0.11 4.85 7.71 -2.91 -0.02 4.83 16 24 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 25 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 29 H 0.35 7.19 9.04 -89.69 -0.81 6.38 16 30 H 0.34 9.28 8.98 -89.69 -0.81 8.48 16 Total: -1.00 -61.76 252.95 0.77 -60.99 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.45 Total: 31.52 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 2.01 Total: -49.82 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.22 Total: -68.59 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.61 Total: -14.84 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -61.76 0.77 -60.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713735835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.074 kcal (2) G-P(sol) polarization free energy of solvation -61.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds