Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86792 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47184 * 300.00007 * 3 2 1 6 6 H 1.48504 * 109.47462 * 59.99994 * 3 2 1 7 7 C 1.39945 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 195.50555 * 7 2 1 9 9 C 1.41400 * 120.00045 * 15.50238 * 7 2 1 10 10 C 1.40590 * 120.10087 * 25.35236 * 9 7 2 11 11 C 1.37598 * 119.60830 * 180.02562 * 10 9 7 12 12 C 1.38490 * 120.13349 * 0.06481 * 11 10 9 13 13 C 1.39006 * 120.81958 * 359.97035 * 12 11 10 14 14 C 1.37325 * 120.02433 * 359.82527 * 13 12 11 15 15 C 1.50621 * 121.65055 * 180.38474 * 14 13 12 16 16 O 1.42724 * 110.29772 * 343.90050 * 15 14 13 17 17 C 1.43220 * 113.09409 * 51.61310 * 16 15 14 18 18 C 1.50782 * 118.65442 * 179.53790 * 13 12 11 19 19 H 1.09005 * 109.41988 * 43.07352 * 18 13 12 20 20 N 1.46894 * 109.42052 * 283.20392 * 18 13 12 21 21 H 0.97010 * 119.99816 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.19546 * 0.08540 * 10 9 7 23 23 H 1.07996 * 119.93422 * 180.02562 * 11 10 9 24 24 H 1.08001 * 119.58943 * 179.97438 * 12 11 10 25 25 H 1.08999 * 109.33028 * 223.64046 * 15 14 13 26 26 H 1.09000 * 109.19402 * 104.06554 * 15 14 13 27 27 H 1.09002 * 109.63671 * 49.21745 * 17 16 15 28 28 H 1.08993 * 109.63479 * 169.83381 * 17 16 15 29 29 H 1.00904 * 111.00561 * 179.97438 * 20 18 13 30 30 H 1.00901 * 111.00259 * 303.95579 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7022 1.3462 -0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0584 -1.2292 0.2495 9 6 1.3394 -2.4141 -0.3284 10 6 0.1920 -2.3840 -1.1403 11 6 -0.4508 -3.5598 -1.4526 12 6 0.0298 -4.7649 -0.9681 13 6 1.1627 -4.8081 -0.1638 14 6 1.8224 -3.6472 0.1569 15 6 3.0580 -3.6524 1.0182 16 8 3.1776 -4.8978 1.7050 17 6 3.0820 -6.0309 0.8344 18 6 1.6373 -6.1456 0.3455 19 1 1.5853 -6.8791 -0.4593 20 7 0.7788 -6.5779 1.4563 21 1 -0.4850 0.8401 0.0004 22 1 -0.1819 -1.4437 -1.5175 23 1 -1.3324 -3.5428 -2.0762 24 1 -0.4819 -5.6825 -1.2184 25 1 2.9939 -2.8435 1.7460 26 1 3.9347 -3.5022 0.3882 27 1 3.7475 -5.8949 -0.0182 28 1 3.3578 -6.9346 1.3777 29 1 1.0756 -7.4728 1.8158 30 1 0.7569 -5.8832 2.1879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713797769.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = -34.492077 kcal Electronic energy + Delta-G solvation = -14813.169281 eV Core-core repulsion = 12379.350299 eV Total energy + Delta-G solvation = -2433.818981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25143 -36.52685 -34.45381 -33.22639 -30.60978 -29.31152 -27.54539 -25.47688 -24.15935 -22.45746 -20.52491 -18.76456 -17.18335 -15.95946 -15.69017 -15.05116 -14.99153 -14.67158 -14.17597 -13.45346 -13.16505 -12.80961 -12.21099 -12.09301 -11.63071 -11.35437 -11.25673 -10.91939 -10.75116 -10.51472 -10.35054 -9.86176 -9.52214 -9.24087 -9.05412 -8.03927 -7.33937 -7.31651 -6.77638 -4.41325 2.74366 2.84898 3.05278 3.09989 3.19078 3.89831 4.48179 4.57173 5.15914 5.37399 5.46768 5.61028 5.78308 6.00428 6.02188 6.25114 6.29437 6.46030 6.52950 6.79009 7.02853 7.21223 7.29297 7.49957 7.60614 7.67072 7.88660 7.92062 8.03551 8.08886 8.23694 8.58084 8.83784 8.92305 10.15750 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037215 B = 0.009996 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.211319 B = 2800.343127 C = 3353.438116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.158 4.158 11 C -0.110 4.110 12 C -0.209 4.209 13 C -0.052 4.052 14 C -0.223 4.223 15 C 0.125 3.875 16 O -0.389 6.389 17 C 0.028 3.972 18 C 0.106 3.894 19 H 0.080 0.920 20 N -0.832 5.832 21 H 0.280 0.720 22 H 0.120 0.880 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.328 0.672 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -4.991 0.399 6.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.177 4.177 11 C -0.128 4.128 12 C -0.229 4.229 13 C -0.052 4.052 14 C -0.225 4.225 15 C 0.050 3.950 16 O -0.307 6.307 17 C -0.052 4.052 18 C -0.005 4.005 19 H 0.098 0.902 20 N -0.360 5.360 21 H 0.091 0.909 22 H 0.138 0.862 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.864 -4.833 0.082 5.618 hybrid contribution 1.021 0.890 0.234 1.374 sum 3.884 -3.943 0.316 5.544 Atomic orbital electron populations 1.69830 1.07545 1.29080 1.35341 1.25897 0.94739 1.01285 0.92231 0.86277 0.80950 0.81032 0.78586 1.18395 1.19728 1.19960 1.19570 0.97257 0.90911 1.41642 0.90361 1.17396 0.91496 0.91027 0.88874 1.21335 0.98794 0.96819 1.00789 1.20691 0.98636 0.93417 1.00072 1.20254 0.99584 0.96348 1.06742 1.18671 0.96443 0.91627 0.98495 1.19903 1.01781 0.93772 1.07050 1.21153 0.94584 0.84339 0.94940 1.87941 1.93668 1.14685 1.34451 1.23371 0.97655 0.89554 0.94578 1.20797 0.90117 0.95826 0.93783 0.90206 1.58941 1.56230 1.06989 1.13845 0.90906 0.86189 0.89339 0.89281 0.88525 0.94211 0.93149 0.90052 0.86049 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.29 10.87 55.55 0.60 -19.69 16 2 C 0.08 1.88 5.18 -17.34 -0.09 1.79 16 3 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -11.94 8.15 -37.74 -0.31 -12.25 16 8 H 0.08 1.92 7.00 -52.49 -0.37 1.55 16 9 C 0.11 3.00 5.58 -106.74 -0.60 2.41 16 10 C -0.16 -4.11 8.68 -38.93 -0.34 -4.45 16 11 C -0.11 -2.62 10.02 -39.72 -0.40 -3.02 16 12 C -0.21 -4.81 9.67 -39.20 -0.38 -5.19 16 13 C -0.05 -1.17 5.28 -104.63 -0.55 -1.72 16 14 C -0.22 -5.35 5.86 -103.93 -0.61 -5.96 16 15 C 0.13 2.68 5.64 35.97 0.20 2.88 16 16 O -0.39 -7.66 10.63 -35.23 -0.37 -8.03 16 17 C 0.03 0.46 6.42 37.13 0.24 0.70 16 18 C 0.11 1.93 3.37 -68.85 -0.23 1.70 16 19 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 20 N -0.83 -14.03 9.24 -5.64 -0.05 -14.08 16 21 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 22 H 0.12 3.21 6.13 -52.49 -0.32 2.89 16 23 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 24 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 25 H 0.10 2.11 7.40 -51.93 -0.38 1.73 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.33 4.44 9.03 -39.29 -0.35 4.08 16 30 H 0.35 6.28 8.80 -39.29 -0.35 5.94 16 LS Contribution 250.76 15.07 3.78 3.78 Total: -1.00 -27.40 250.76 -7.58 -34.98 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.44 Total: 12.79 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -3.06 Total: -23.11 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.55 Total: -33.76 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.37 Total: -8.03 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.40 -7.58 -34.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713797769.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.483 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds