Wall clock time and date at job start Mon Mar 30 2020 03:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46665 * 141.37171 * 3 2 1 5 5 C 1.36815 * 119.99784 * 96.00805 * 4 3 2 6 6 H 1.07998 * 120.00017 * 162.15453 * 5 4 3 7 7 C 1.39074 * 120.00189 * 341.88202 * 5 4 3 8 8 N 1.31348 * 119.99780 * 337.37252 * 7 5 4 9 9 Si 1.86797 * 120.00144 * 157.37739 * 7 5 4 10 10 H 1.48493 * 109.47454 * 59.99637 * 9 7 5 11 11 H 1.48508 * 109.47214 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47150 * 299.99600 * 9 7 5 13 13 C 1.34778 * 120.00135 * 276.00818 * 4 3 2 14 14 O 1.21654 * 119.99723 * 180.02562 * 13 4 3 15 15 C 1.46948 * 120.00008 * 359.97438 * 13 4 3 16 16 C 1.33119 * 119.99956 * 180.02562 * 15 13 4 17 17 C 1.50704 * 120.00014 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49840 * 188.62120 * 17 16 15 19 19 C 1.52996 * 60.00140 * 252.51245 * 18 17 16 20 20 H 4.40637 * 5.51473 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.47012 * 21.37704 * 3 2 1 22 22 H 1.08994 * 109.46961 * 261.37318 * 3 2 1 23 23 H 0.97002 * 120.00283 * 180.02562 * 8 7 5 24 24 H 1.08004 * 120.00110 * 0.02562 * 15 13 4 25 25 H 1.07997 * 120.00496 * 0.02562 * 16 15 13 26 26 H 1.09003 * 115.54963 * 334.33110 * 17 16 15 27 27 H 1.08995 * 117.50359 * 0.02562 * 18 17 16 28 28 H 1.09001 * 117.49574 * 145.02275 * 18 17 16 29 29 H 1.09004 * 117.49893 * 252.50945 * 19 18 17 30 30 H 1.09004 * 117.51839 * 107.48472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0799 -0.8623 5 6 3.4781 2.2873 -0.3185 6 1 4.0957 2.9747 -0.8774 7 6 3.0282 2.6316 0.9516 8 7 1.9569 2.0556 1.4473 9 14 3.9472 3.9134 1.9524 10 1 3.9596 5.2020 1.2146 11 1 3.2697 4.0991 3.2607 12 1 5.3428 3.4584 2.1774 13 6 3.2432 0.8835 -2.1912 14 8 3.6487 1.7797 -2.9071 15 6 2.8739 -0.4134 -2.7751 16 6 2.9825 -0.6075 -4.0876 17 6 2.6043 -1.9378 -4.6864 18 6 2.9387 -2.1692 -6.1613 19 6 1.4869 -1.9499 -5.7314 20 1 -1.0502 -0.0001 0.0003 21 1 3.0098 -0.9562 -0.3746 22 1 3.0092 0.1550 1.0160 23 1 1.6428 2.2960 2.3330 24 1 2.5143 -1.2091 -2.1395 25 1 3.3425 0.1879 -4.7232 26 1 2.6740 -2.7928 -4.0140 27 1 3.4326 -1.3596 -6.6985 28 1 3.2286 -3.1768 -6.4595 29 1 0.8215 -2.8132 -5.7468 30 1 1.0250 -0.9959 -5.9855 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798803271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:19 Heat of formation + Delta-G solvation = 55.543243 kcal Electronic energy + Delta-G solvation = -14115.809418 eV Core-core repulsion = 11685.894661 eV Total energy + Delta-G solvation = -2429.914757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54274 -38.40038 -37.09798 -34.19623 -33.06428 -33.00911 -28.38844 -27.10520 -24.63147 -23.19120 -21.51465 -20.04218 -19.67269 -18.45197 -18.08894 -16.75396 -16.47074 -15.88725 -15.76176 -15.20809 -14.50952 -14.26643 -14.09769 -13.59906 -13.33723 -12.76625 -12.53951 -12.46171 -12.31202 -12.16329 -11.98730 -11.30118 -11.22068 -11.10820 -10.69962 -10.37194 -9.97207 -9.82708 -8.37775 -5.94279 0.51996 1.40741 1.43007 1.52186 2.02233 2.29492 2.37784 2.46205 3.01087 3.15331 3.21031 3.77369 3.88892 4.00473 4.10124 4.20016 4.34963 4.47242 4.69512 4.81355 4.90511 5.03403 5.19183 5.29440 5.39485 5.42425 5.52180 5.56210 6.06996 6.44023 7.10619 7.13596 7.37618 7.98241 8.60562 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041203 B = 0.007440 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.401477 B = 3762.781522 C = 4262.242976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.157 4.157 3 C 0.233 3.767 4 N -0.440 5.440 5 C -0.359 4.359 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.865 5.865 9 Si 0.988 3.012 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.265 1.265 13 C 0.456 3.544 14 O -0.644 6.644 15 C -0.199 4.199 16 C -0.055 4.055 17 C -0.146 4.146 18 C -0.161 4.161 19 C -0.164 4.164 20 H 0.234 0.766 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.275 0.725 24 H 0.138 0.862 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -10.703 -4.933 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.158 4.158 3 C 0.111 3.889 4 N -0.155 5.155 5 C -0.486 4.486 6 H 0.092 0.908 7 C -0.200 4.200 8 N -0.500 5.500 9 Si 0.811 3.189 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.190 1.190 13 C 0.249 3.751 14 O -0.535 6.535 15 C -0.219 4.219 16 C -0.076 4.076 17 C -0.163 4.163 18 C -0.198 4.198 19 C -0.201 4.201 20 H 0.251 0.749 21 H 0.117 0.883 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.156 0.844 25 H 0.118 0.882 26 H 0.145 0.855 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.532 -10.256 -5.016 11.519 hybrid contribution 0.097 1.155 0.720 1.365 sum -1.435 -9.101 -4.295 10.165 Atomic orbital electron populations 1.25150 0.96344 1.02357 1.02128 1.23411 0.94964 0.98454 0.99001 1.18355 0.84779 0.89423 0.96379 1.43807 1.54553 1.12112 1.05067 1.19570 1.31438 0.96720 1.00877 0.90757 1.26071 0.95328 1.00449 0.98150 1.70160 1.18467 1.43370 1.18020 0.85098 0.78821 0.77803 0.77196 1.20476 1.19376 1.18979 1.19051 0.84217 0.89776 0.82024 1.90539 1.54533 1.47649 1.60759 1.22570 1.06102 0.96068 0.97187 1.23007 0.93429 0.96617 0.94587 1.21282 1.06480 0.95238 0.93349 1.23101 0.98086 1.04181 0.94421 1.23064 0.91937 1.03953 1.01157 0.74922 0.88251 0.88917 0.91459 0.84434 0.88168 0.85451 0.88969 0.85991 0.86114 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.76 19.25 74.32 1.43 -8.33 16 2 C -0.16 -7.06 11.20 31.13 0.35 -6.71 16 3 C 0.23 10.57 4.79 84.57 0.41 10.98 16 4 N -0.44 -23.72 2.59 -649.70 -1.68 -25.40 16 5 C -0.36 -20.93 9.30 84.12 0.78 -20.14 16 6 H 0.07 4.67 7.40 -2.91 -0.02 4.65 16 7 C 0.00 0.25 4.82 84.97 0.41 0.66 16 8 N -0.86 -45.57 9.57 21.68 0.21 -45.36 16 9 Si 0.99 42.34 29.61 68.60 2.03 44.37 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.46 24.31 7.51 86.52 0.65 24.96 16 14 O -0.64 -39.48 15.87 -4.20 -0.07 -39.55 16 15 C -0.20 -8.08 8.72 23.40 0.20 -7.88 16 16 C -0.06 -1.96 9.24 24.54 0.23 -1.73 16 17 C -0.15 -3.60 6.01 -11.54 -0.07 -3.67 16 18 C -0.16 -3.14 10.23 30.59 0.31 -2.83 16 19 C -0.16 -3.38 10.23 30.59 0.31 -3.07 16 20 H 0.23 7.28 7.80 -4.41 -0.03 7.25 16 21 H 0.10 3.69 6.45 -2.38 -0.02 3.68 16 22 H 0.09 4.40 6.51 -2.39 -0.02 4.38 16 23 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 24 H 0.14 4.83 6.23 -2.91 -0.02 4.81 16 25 H 0.10 3.95 7.49 -2.91 -0.02 3.93 16 26 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -70.55 271.18 6.63 -63.92 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.13 Total: 19.78 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.01 Total: -17.76 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.48 Total: -70.76 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.07 Total: -39.55 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.55 6.63 -63.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.466 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds