Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48496 * 109.47433 * 270.00150 * 3 2 1 5 5 H 1.48504 * 109.47249 * 30.00141 * 3 2 1 6 6 H 1.48501 * 109.47298 * 149.99705 * 3 2 1 7 7 C 1.39075 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00009 * 189.88164 * 7 2 1 9 9 N 1.36814 * 119.99648 * 9.87903 * 7 2 1 10 10 C 1.34778 * 119.99834 * 205.36760 * 9 7 2 11 11 O 1.21663 * 120.00423 * 354.47994 * 10 9 7 12 12 C 1.43203 * 120.00113 * 174.75447 * 10 9 7 13 13 C 5.80254 * 81.66489 * 179.28023 * 2 1 3 14 14 C 7.17172 * 76.98336 * 180.36954 * 2 1 3 15 15 C 1.52997 * 117.49707 * 102.82355 * 14 13 12 16 16 C 1.52994 * 117.50032 * 34.20230 * 14 13 12 17 17 C 1.46504 * 120.00349 * 25.36811 * 9 7 2 18 18 C 1.52999 * 117.49603 * 130.91712 * 17 9 7 19 19 C 1.53000 * 117.49599 * 62.25975 * 17 9 7 20 20 H 0.97004 * 119.99733 * 0.02562 * 1 2 3 21 21 H 1.09000 * 115.54575 * 248.53156 * 14 13 12 22 22 H 1.08998 * 117.50021 * 359.97438 * 15 14 13 23 23 H 1.09003 * 117.50017 * 145.01522 * 15 14 13 24 24 H 1.09003 * 117.49951 * 214.97701 * 16 14 13 25 25 H 1.09005 * 117.49924 * 359.97158 * 16 14 13 26 26 H 1.08995 * 115.54631 * 276.59154 * 17 9 7 27 27 H 1.08994 * 117.50420 * 0.02562 * 18 17 9 28 28 H 1.09009 * 117.49223 * 145.02387 * 18 17 9 29 29 H 1.08997 * 117.49807 * 214.98323 * 19 17 9 30 30 H 1.09000 * 117.49695 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4000 5 1 1.4450 2.6527 0.7001 6 1 3.5450 1.4401 0.7001 7 6 2.0088 -1.2044 -0.0005 8 1 3.0768 -1.2114 0.1600 9 7 1.3399 -2.3804 -0.2044 10 6 1.8427 -3.5340 0.2781 11 8 2.9385 -3.5462 0.8065 12 6 1.0897 -4.7467 0.1636 13 6 0.4723 -5.7408 0.0721 14 6 -0.3019 -6.9873 -0.0451 15 6 -0.3619 -7.6549 -1.4204 16 6 -1.5948 -6.9418 -0.8617 17 6 0.0771 -2.3856 -0.9470 18 6 -0.0759 -3.4100 -2.0731 19 6 0.1141 -1.9282 -2.4066 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2818 -7.6371 0.8298 22 1 0.1715 -7.1709 -2.2385 23 1 -0.3811 -8.7443 -1.4506 24 1 -2.4253 -7.5620 -0.5244 25 1 -1.8725 -5.9886 -1.3119 26 1 -0.8114 -2.1408 -0.3652 27 1 0.7628 -4.0803 -2.2612 28 1 -1.0653 -3.8388 -2.2324 29 1 -0.7504 -1.3827 -2.7851 30 1 1.0779 -1.6229 -2.8140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142372020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = 60.751741 kcal Electronic energy + Delta-G solvation = -14337.387308 eV Core-core repulsion = 11907.698409 eV Total energy + Delta-G solvation = -2429.688899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71878 -38.35753 -37.95962 -35.20531 -33.57638 -32.98186 -27.75084 -25.25613 -23.55872 -23.22927 -23.08740 -22.18816 -19.16893 -18.64721 -17.44184 -17.19684 -16.53949 -15.99606 -15.75737 -15.23618 -15.00925 -14.12904 -13.46391 -13.21426 -13.05679 -12.81176 -12.68511 -12.43287 -12.28702 -12.14839 -12.09902 -11.72553 -11.29098 -10.98783 -10.81022 -10.71190 -10.46093 -9.81092 -8.39685 -6.08769 0.71889 1.38014 1.43125 1.46143 1.55386 2.22043 2.51322 2.70366 2.94997 3.08705 3.23474 3.34444 3.93318 4.05787 4.11629 4.17389 4.27546 4.41699 4.68652 4.69853 4.84279 4.97354 5.06199 5.19348 5.25964 5.32446 5.36261 5.40640 5.96771 6.36537 6.45797 7.00888 7.26692 7.85192 8.62112 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.008083 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.522221 B = 3463.075487 C = 3844.094319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.014 3.986 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.354 4.354 8 H 0.074 0.926 9 N -0.405 5.405 10 C 0.530 3.470 11 O -0.632 6.632 12 C -0.228 4.228 13 C -0.075 4.075 14 C -0.080 4.080 15 C -0.149 4.149 16 C -0.148 4.148 17 C 0.098 3.902 18 C -0.172 4.172 19 C -0.153 4.153 20 H 0.278 0.722 21 H 0.151 0.849 22 H 0.088 0.912 23 H 0.135 0.865 24 H 0.135 0.865 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 -9.167 -5.879 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.481 4.481 8 H 0.092 0.908 9 N -0.119 5.119 10 C 0.322 3.678 11 O -0.523 6.523 12 C -0.231 4.231 13 C -0.078 4.078 14 C -0.097 4.097 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.006 4.006 18 C -0.210 4.210 19 C -0.190 4.190 20 H 0.088 0.912 21 H 0.168 0.832 22 H 0.106 0.894 23 H 0.153 0.847 24 H 0.153 0.847 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.649 -8.947 -5.652 13.057 hybrid contribution 0.831 1.166 0.377 1.481 sum -6.818 -7.781 -5.275 11.612 Atomic orbital electron populations 1.69937 1.06797 1.29014 1.45105 1.26129 0.96439 1.02091 0.94408 0.84957 0.77952 0.76484 0.79098 1.18699 1.19216 1.20138 1.19631 0.92996 0.83668 1.51848 0.90781 1.43139 1.19907 1.05179 1.43655 1.15212 0.86312 0.82545 0.83768 1.90592 1.23196 1.86825 1.51680 1.20815 1.01234 0.96044 1.04999 1.21998 0.95754 0.94353 0.95723 1.19132 1.00435 0.90859 0.99315 1.23196 1.00719 1.01491 0.93129 1.23227 0.91202 1.03177 1.00888 1.21318 0.87528 1.03720 0.88054 1.23419 1.03290 0.92114 1.02148 1.22878 1.02314 0.96348 0.97505 0.91159 0.83201 0.89375 0.84685 0.84731 0.89000 0.87691 0.90556 0.85652 0.87304 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.63 10.81 21.68 0.23 -45.40 16 2 C 0.01 0.77 5.18 84.97 0.44 1.21 16 3 Si 0.99 42.37 29.56 68.60 2.03 44.40 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.35 -20.94 9.13 84.12 0.77 -20.17 16 8 H 0.07 4.68 7.41 -2.91 -0.02 4.66 16 9 N -0.40 -22.73 2.92 -621.52 -1.81 -24.55 16 10 C 0.53 30.57 7.31 85.49 0.63 31.19 16 11 O -0.63 -41.19 16.79 -4.23 -0.07 -41.26 16 12 C -0.23 -10.81 10.54 30.02 0.32 -10.49 16 13 C -0.07 -2.79 13.22 31.13 0.41 -2.38 16 14 C -0.08 -1.89 6.22 -12.60 -0.08 -1.97 16 15 C -0.15 -2.61 10.21 30.59 0.31 -2.30 16 16 C -0.15 -2.60 10.21 30.59 0.31 -2.29 16 17 C 0.10 4.61 3.62 44.99 0.16 4.77 16 18 C -0.17 -6.35 8.65 30.62 0.26 -6.09 16 19 C -0.15 -6.19 9.92 30.62 0.30 -5.88 16 20 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 21 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 22 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.11 5.21 7.38 -2.39 -0.02 5.20 16 27 H 0.08 2.98 7.30 -2.39 -0.02 2.96 16 28 H 0.13 3.67 8.14 -2.38 -0.02 3.65 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -72.36 271.14 5.36 -67.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.14 Total: 14.19 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.84 Total: -14.39 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.58 Total: -69.95 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.07 Total: -41.26 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.36 5.36 -67.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142372020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.761 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds