Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21313 * 119.99843 * 2 1 4 4 C 1.46747 * 120.00063 * 179.97438 * 2 1 3 5 5 C 1.40112 * 120.09455 * 180.02562 * 4 2 1 6 6 C 1.36551 * 119.90340 * 180.02562 * 5 4 2 7 7 C 1.39312 * 120.09292 * 0.02562 * 6 5 4 8 8 N 1.38888 * 119.90277 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00280 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46632 * 90.00476 * 14 12 10 16 16 H 1.48496 * 109.46690 * 210.00029 * 14 12 10 17 17 H 1.48498 * 109.47171 * 330.00226 * 14 12 10 18 18 C 1.39313 * 120.19557 * 0.25773 * 7 6 5 19 19 C 1.36553 * 120.09257 * 359.48155 * 18 7 6 20 20 H 1.09001 * 109.46784 * 270.00182 * 1 2 3 21 21 H 1.09003 * 109.46753 * 29.99929 * 1 2 3 22 22 H 1.09000 * 109.46876 * 149.99949 * 1 2 3 23 23 H 1.07998 * 120.05212 * 0.02562 * 5 4 2 24 24 H 1.07997 * 119.95360 * 179.97438 * 6 5 4 25 25 H 0.97001 * 120.00469 * 359.97438 * 8 7 6 26 26 H 1.09001 * 109.47060 * 300.00457 * 9 8 7 27 27 H 1.09004 * 109.47073 * 59.99945 * 9 8 7 28 28 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 29 29 H 1.08000 * 119.95400 * 179.72215 * 18 7 6 30 30 H 1.08000 * 120.04664 * 180.24265 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2408 -1.2709 0.0006 5 6 3.6419 -1.2732 0.0011 6 6 4.3208 -2.4580 0.0011 7 6 3.6222 -3.6633 0.0000 8 7 4.3166 -4.8661 -0.0005 9 6 3.5841 -6.1349 -0.0022 10 6 4.5634 -7.2803 -0.0018 11 1 5.6252 -7.0829 -0.0001 12 6 4.1038 -8.5802 -0.0027 13 7 2.8108 -8.8205 -0.0044 14 14 5.3178 -10.0000 -0.0030 15 1 5.6387 -10.3770 1.3971 16 1 4.7181 -11.1637 -0.7039 17 1 6.5613 -9.5880 -0.7022 18 6 2.2290 -3.6657 -0.0065 19 6 1.5423 -2.4854 -0.0011 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 4.1843 -0.3392 0.0015 24 1 5.4007 -2.4607 0.0011 25 1 5.2866 -4.8662 -0.0005 26 1 2.9567 -6.1934 0.8872 27 1 2.9581 -6.1919 -0.8928 28 1 2.4875 -9.7351 -0.0054 29 1 1.6914 -4.6023 -0.0118 30 1 0.4623 -2.4881 -0.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033432805.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -24.640845 kcal Electronic energy + Delta-G solvation = -13671.698893 eV Core-core repulsion = 11238.307093 eV Total energy + Delta-G solvation = -2433.391800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.63220 -38.15095 -35.11851 -32.80900 -31.32955 -30.12186 -28.75353 -26.49401 -23.33620 -22.65826 -21.09856 -19.42771 -17.57636 -16.51255 -15.67169 -15.44641 -14.75224 -14.71643 -14.12863 -13.94195 -13.45932 -13.19610 -12.91462 -12.29151 -12.15148 -12.12901 -11.97806 -11.76818 -11.03888 -10.98597 -10.57794 -10.24661 -9.60872 -9.54106 -9.41797 -8.73392 -8.63661 -6.80255 -6.32557 -4.38926 1.24604 1.90458 2.86614 3.16105 3.22987 3.25291 4.11867 4.32120 4.35541 4.46763 5.05235 5.12736 5.21537 5.34190 5.47103 5.59726 5.74478 5.89173 6.01793 6.13095 6.38176 6.70967 6.76522 6.86232 6.92440 7.23478 7.25377 7.51010 7.78955 7.88587 8.02669 8.43445 8.71717 9.28207 10.77899 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.072130 B = 0.005100 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.092250 B = 5488.881502 C = 5856.526064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.402 3.598 3 O -0.491 6.491 4 C -0.274 4.274 5 C -0.004 4.004 6 C -0.235 4.235 7 C 0.269 3.731 8 N -0.709 5.709 9 C 0.244 3.756 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.220 4.220 19 C -0.016 4.016 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.395 0.605 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.131 0.869 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 9.961 0.050 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.285 3.715 3 O -0.371 6.371 4 C -0.278 4.278 5 C -0.023 4.023 6 C -0.258 4.258 7 C 0.154 3.846 8 N -0.327 5.327 9 C 0.123 3.877 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.732 3.268 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.243 4.243 19 C -0.036 4.036 20 H 0.110 0.890 21 H 0.098 0.902 22 H 0.103 0.897 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.229 0.771 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.618 10.060 0.043 10.396 hybrid contribution 0.879 -1.084 0.022 1.396 sum -1.739 8.977 0.065 9.144 Atomic orbital electron populations 1.22221 0.95014 1.04279 1.04218 1.22208 0.91077 0.87921 0.70324 1.90482 1.72210 1.34720 1.39650 1.19916 0.94276 0.93995 1.19581 1.20709 0.93046 0.97369 0.91224 1.20292 0.99481 0.91185 1.14848 1.18400 0.92044 0.86743 0.87455 1.45668 1.08983 1.04307 1.73733 1.19282 0.92894 0.78375 0.97158 1.21164 0.93072 0.90619 1.53406 0.91858 1.24923 0.95518 0.98981 0.94401 1.69933 1.12604 1.21090 1.48858 0.86381 0.80812 0.81243 0.78347 1.20354 1.20878 1.19697 1.20508 0.92461 0.99053 1.12310 1.20876 0.99124 0.91159 0.92402 0.89021 0.90185 0.89712 0.86005 0.86288 0.77076 0.95562 0.95551 0.92296 0.85125 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 9.75 36.01 0.35 -1.69 16 2 C 0.40 5.83 7.21 -30.87 -0.22 5.61 16 3 O -0.49 -8.58 17.08 5.53 0.09 -8.48 16 4 C -0.27 -4.22 5.87 -105.06 -0.62 -4.83 16 5 C 0.00 -0.07 9.54 -39.49 -0.38 -0.44 16 6 C -0.23 -3.80 9.82 -39.79 -0.39 -4.19 16 7 C 0.27 4.87 6.65 -83.87 -0.56 4.31 16 8 N -0.71 -14.05 5.69 -59.80 -0.34 -14.39 16 9 C 0.24 5.81 4.65 -5.19 -0.02 5.79 16 10 C -0.54 -14.08 9.28 -34.44 -0.32 -14.40 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 14 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 C -0.22 -3.83 9.23 -39.79 -0.37 -4.20 16 19 C -0.02 -0.24 9.31 -39.49 -0.37 -0.61 16 20 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.73 6.45 -51.93 -0.33 0.40 16 23 H 0.12 1.82 7.64 -52.49 -0.40 1.42 16 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.40 7.23 8.32 -40.82 -0.34 6.90 16 26 H 0.03 0.67 7.94 -51.93 -0.41 0.26 16 27 H 0.03 0.68 7.92 -51.93 -0.41 0.26 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.13 2.37 6.69 -52.49 -0.35 2.02 16 30 H 0.12 1.42 6.34 -52.49 -0.33 1.09 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -28.64 265.24 -6.91 -35.55 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.38 Total: 4.99 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.99 Total: -13.01 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.40 Total: -38.19 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.64 -6.91 -35.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432805.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.912 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds