Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21309 * 119.99813 * 2 1 4 4 C 1.46647 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.40062 * 120.24452 * 354.26627 * 4 2 1 6 6 C 1.37618 * 119.90450 * 180.02562 * 5 4 2 7 7 C 1.38708 * 120.39295 * 359.97438 * 6 5 4 8 8 C 1.37936 * 120.48727 * 0.02562 * 7 6 5 9 9 C 1.38953 * 120.09364 * 0.02562 * 8 7 6 10 10 N 1.38695 * 120.19908 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00080 * 5.51148 * 10 9 8 12 12 C 1.50699 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00420 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99475 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99523 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46962 * 90.00167 * 16 14 12 18 18 H 1.48499 * 109.47087 * 209.99959 * 16 14 12 19 19 H 1.48502 * 109.47314 * 330.00397 * 16 14 12 20 20 H 1.08994 * 109.46885 * 240.00421 * 1 2 3 21 21 H 1.09002 * 109.47083 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.46989 * 119.99958 * 1 2 3 23 23 H 1.08008 * 120.04698 * 359.97438 * 5 4 2 24 24 H 1.07998 * 119.80549 * 179.97438 * 6 5 4 25 25 H 1.07998 * 119.75661 * 180.02562 * 7 6 5 26 26 H 1.07998 * 119.94978 * 179.72380 * 8 7 6 27 27 H 0.97001 * 120.00347 * 185.52130 * 10 9 8 28 28 H 1.09002 * 109.47094 * 300.00734 * 11 10 9 29 29 H 1.09006 * 109.46587 * 60.00095 * 11 10 9 30 30 H 0.96995 * 120.00170 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5504 -2.4829 0.1220 6 6 2.2455 -3.6706 0.1222 7 6 3.6274 -3.6750 0.0023 8 6 4.3231 -2.4900 -0.1182 9 6 3.6417 -1.2790 -0.1198 10 7 4.3391 -0.0863 -0.2403 11 6 5.7831 -0.1037 -0.4874 12 6 6.2945 1.3110 -0.5770 13 1 5.6125 2.1402 -0.4610 14 6 7.6335 1.5466 -0.8070 15 7 8.4640 0.5369 -0.9488 16 14 8.2673 3.3003 -0.9188 17 1 8.6720 3.7673 0.4316 18 1 9.4389 3.3460 -1.8300 19 1 7.1950 4.1816 -1.4465 20 1 -0.3633 -0.5137 0.8900 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5138 -0.8899 23 1 0.4744 -2.4859 0.2161 24 1 1.7120 -4.6048 0.2164 25 1 4.1625 -4.6130 0.0033 26 1 5.3994 -2.5033 -0.2066 27 1 3.8710 0.7595 -0.1608 28 1 6.2854 -0.6211 0.3300 29 1 5.9850 -0.6227 -1.4245 30 1 9.4058 0.7027 -1.1110 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033432807.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = -17.601621 kcal Electronic energy + Delta-G solvation = -14146.703483 eV Core-core repulsion = 11713.616927 eV Total energy + Delta-G solvation = -2433.086556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79118 -37.67386 -35.14059 -32.64454 -31.59138 -29.18694 -29.07577 -26.27783 -23.49786 -22.75099 -20.66928 -19.58737 -17.12997 -16.49452 -15.77149 -15.37512 -14.72980 -14.62767 -14.02602 -13.69077 -13.56014 -13.25252 -12.84664 -12.09998 -12.08574 -12.02278 -11.73787 -11.57358 -10.99456 -10.93810 -10.73420 -10.16373 -9.56617 -9.46380 -9.11285 -8.59230 -8.53859 -6.68939 -6.20963 -4.25582 1.19662 2.14122 2.83318 3.25003 3.30685 3.35649 4.26152 4.34310 4.47218 4.57397 5.16423 5.18076 5.27148 5.37878 5.49640 5.55476 5.75155 5.90973 6.05681 6.23130 6.34916 6.69862 6.77888 6.96461 7.03460 7.33050 7.35256 7.65392 7.87595 7.97737 8.26584 8.71844 8.95990 9.40690 10.89783 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034258 B = 0.007652 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.132699 B = 3658.469785 C = 4451.016574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.397 3.603 3 O -0.480 6.480 4 C -0.291 4.291 5 C -0.022 4.022 6 C -0.223 4.223 7 C -0.038 4.038 8 C -0.215 4.215 9 C 0.286 3.714 10 N -0.695 5.695 11 C 0.239 3.761 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.412 0.588 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 -6.623 1.731 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.280 3.720 3 O -0.359 6.359 4 C -0.298 4.298 5 C -0.041 4.041 6 C -0.244 4.244 7 C -0.058 4.058 8 C -0.238 4.238 9 C 0.167 3.833 10 N -0.322 5.322 11 C 0.117 3.883 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 H 0.106 0.894 21 H 0.097 0.903 22 H 0.107 0.893 23 H 0.137 0.863 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.148 0.852 27 H 0.258 0.742 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.101 -5.982 1.646 13.599 hybrid contribution 0.324 0.947 -0.055 1.003 sum -11.777 -5.035 1.592 12.907 Atomic orbital electron populations 1.22162 0.94555 1.04358 1.03962 1.22180 0.91303 0.87616 0.70871 1.90266 1.70934 1.34777 1.39888 1.19704 0.92387 0.94861 1.22814 1.20980 0.98595 0.91208 0.93286 1.20607 0.94296 0.97346 1.12130 1.21039 0.94144 0.97171 0.93419 1.20858 1.00633 0.91017 1.11272 1.18295 0.89811 0.88147 0.87049 1.46498 1.10859 1.06194 1.68619 1.19304 0.74377 0.98291 0.96279 1.21211 0.93876 0.91673 1.50893 0.91744 1.24925 0.96435 0.97954 0.94609 1.69938 1.04128 1.30668 1.48131 0.86381 0.78462 0.83834 0.78130 1.20366 1.20930 1.19634 0.89367 0.90314 0.89308 0.86263 0.86800 0.86473 0.85203 0.74192 0.95671 0.95677 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.01 36.01 0.32 -1.82 16 2 C 0.40 6.63 7.20 -30.91 -0.22 6.41 16 3 O -0.48 -9.88 14.38 5.53 0.08 -9.80 16 4 C -0.29 -5.03 5.88 -104.91 -0.62 -5.65 16 5 C -0.02 -0.30 9.46 -39.12 -0.37 -0.67 16 6 C -0.22 -3.02 10.02 -39.63 -0.40 -3.42 16 7 C -0.04 -0.58 10.03 -39.52 -0.40 -0.97 16 8 C -0.22 -4.03 9.30 -39.43 -0.37 -4.40 16 9 C 0.29 5.86 6.66 -83.58 -0.56 5.30 16 10 N -0.69 -16.40 5.57 -59.57 -0.33 -16.73 16 11 C 0.24 6.33 4.69 -5.19 -0.02 6.30 16 12 C -0.54 -15.38 9.28 -34.44 -0.32 -15.70 16 13 H 0.06 1.83 7.60 -52.49 -0.40 1.43 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 21 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.12 1.21 6.99 -52.48 -0.37 0.84 16 24 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.13 2.56 6.72 -52.49 -0.35 2.20 16 27 H 0.41 9.97 4.84 -40.94 -0.20 9.77 16 28 H 0.03 0.70 7.72 -51.93 -0.40 0.30 16 29 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -30.78 261.66 -7.01 -37.79 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.37 Total: 6.38 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.04 Total: -12.90 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.40 Total: -41.99 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.78 -7.01 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432807.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.186 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds