Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21309 * 119.99813 * 2 1 4 4 C 1.46647 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.40062 * 120.24452 * 354.26627 * 4 2 1 6 6 C 1.37618 * 119.90450 * 180.02562 * 5 4 2 7 7 C 1.38708 * 120.39295 * 359.97438 * 6 5 4 8 8 C 1.37936 * 120.48727 * 0.02562 * 7 6 5 9 9 C 1.38953 * 120.09364 * 0.02562 * 8 7 6 10 10 N 1.38695 * 120.19908 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00080 * 5.51148 * 10 9 8 12 12 C 1.50699 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00420 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99475 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99523 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46962 * 90.00167 * 16 14 12 18 18 H 1.48499 * 109.47087 * 209.99959 * 16 14 12 19 19 H 1.48502 * 109.47314 * 330.00397 * 16 14 12 20 20 H 1.08994 * 109.46885 * 240.00421 * 1 2 3 21 21 H 1.09002 * 109.47083 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.46989 * 119.99958 * 1 2 3 23 23 H 1.08008 * 120.04698 * 359.97438 * 5 4 2 24 24 H 1.07998 * 119.80549 * 179.97438 * 6 5 4 25 25 H 1.07998 * 119.75661 * 180.02562 * 7 6 5 26 26 H 1.07998 * 119.94978 * 179.72380 * 8 7 6 27 27 H 0.97001 * 120.00347 * 185.52130 * 10 9 8 28 28 H 1.09002 * 109.47094 * 300.00734 * 11 10 9 29 29 H 1.09006 * 109.46587 * 60.00095 * 11 10 9 30 30 H 0.96995 * 120.00170 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5504 -2.4829 0.1220 6 6 2.2455 -3.6706 0.1222 7 6 3.6274 -3.6750 0.0023 8 6 4.3231 -2.4900 -0.1182 9 6 3.6417 -1.2790 -0.1198 10 7 4.3391 -0.0863 -0.2403 11 6 5.7831 -0.1037 -0.4874 12 6 6.2945 1.3110 -0.5770 13 1 5.6125 2.1402 -0.4610 14 6 7.6335 1.5466 -0.8070 15 7 8.4640 0.5369 -0.9488 16 14 8.2673 3.3003 -0.9188 17 1 8.6720 3.7673 0.4316 18 1 9.4389 3.3460 -1.8300 19 1 7.1950 4.1816 -1.4465 20 1 -0.3633 -0.5137 0.8900 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5138 -0.8899 23 1 0.4744 -2.4859 0.2161 24 1 1.7120 -4.6048 0.2164 25 1 4.1625 -4.6130 0.0033 26 1 5.3994 -2.5033 -0.2066 27 1 3.8710 0.7595 -0.1608 28 1 6.2854 -0.6211 0.3300 29 1 5.9850 -0.6227 -1.4245 30 1 9.4058 0.7027 -1.1110 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033432807.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -37.774467 kcal Electronic energy + Delta-G solvation = -14147.578243 eV Core-core repulsion = 11713.616927 eV Total energy + Delta-G solvation = -2433.961316 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15411 -39.04376 -36.82857 -34.69257 -32.84204 -30.83853 -30.18553 -28.10337 -25.05673 -24.39382 -22.13206 -20.93144 -18.98490 -17.86318 -17.43471 -16.98367 -16.35937 -16.00715 -15.35495 -15.12072 -15.05580 -14.93009 -14.40732 -13.99705 -13.43704 -13.04856 -12.95969 -12.92933 -12.79426 -12.69850 -12.35804 -11.89820 -11.55357 -11.18903 -10.63984 -10.47856 -9.85891 -8.38833 -8.27731 -6.53412 -0.08599 0.81967 1.34162 1.36412 1.48350 1.57671 2.28779 2.86791 2.94714 3.05619 3.32708 3.98683 4.22842 4.29847 4.52514 4.59806 4.70351 4.74528 4.76867 4.94500 5.11445 5.15949 5.22047 5.40893 5.45529 5.55020 5.71134 5.79236 6.11308 6.40786 6.62238 6.68980 7.15171 7.22440 8.73057 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034258 B = 0.007652 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.132699 B = 3658.469785 C = 4451.016574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.389 3.611 3 O -0.529 6.529 4 C -0.299 4.299 5 C -0.008 4.008 6 C -0.205 4.205 7 C -0.031 4.031 8 C -0.248 4.248 9 C 0.243 3.757 10 N -0.721 5.721 11 C 0.265 3.735 12 C -0.566 4.566 13 H 0.058 0.942 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.979 3.021 17 H -0.268 1.268 18 H -0.271 1.271 19 H -0.268 1.268 20 H 0.122 0.878 21 H 0.079 0.921 22 H 0.118 0.882 23 H 0.173 0.827 24 H 0.162 0.838 25 H 0.147 0.853 26 H 0.100 0.900 27 H 0.405 0.595 28 H -0.002 1.002 29 H -0.004 1.004 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.736 -7.808 2.036 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.275 3.725 3 O -0.411 6.411 4 C -0.305 4.305 5 C -0.026 4.026 6 C -0.225 4.225 7 C -0.050 4.050 8 C -0.271 4.271 9 C 0.130 3.870 10 N -0.352 5.352 11 C 0.142 3.858 12 C -0.604 4.604 13 H 0.076 0.924 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.802 3.198 17 H -0.193 1.193 18 H -0.196 1.196 19 H -0.193 1.193 20 H 0.140 0.860 21 H 0.098 0.902 22 H 0.136 0.864 23 H 0.190 0.810 24 H 0.179 0.821 25 H 0.165 0.835 26 H 0.118 0.882 27 H 0.251 0.749 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.037 -7.241 1.961 16.805 hybrid contribution 1.060 1.096 -0.124 1.529 sum -13.978 -6.145 1.837 15.379 Atomic orbital electron populations 1.22183 0.89322 1.05584 1.06755 1.23107 0.94122 0.86450 0.68807 1.90253 1.72464 1.36313 1.42072 1.20187 0.91117 0.97229 1.22001 1.21567 1.01062 0.89433 0.90529 1.21210 0.93382 0.99279 1.08652 1.21443 0.95504 0.96649 0.91375 1.20860 0.99696 0.92457 1.14122 1.18817 0.91663 0.87426 0.89093 1.46152 1.09253 1.07267 1.72571 1.18692 0.76754 0.96753 0.93646 1.21521 0.94630 0.92341 1.51876 0.92404 1.25910 0.96366 1.02786 0.93623 1.70051 1.04637 1.33044 1.48262 0.85252 0.77969 0.77927 0.78691 1.19272 1.19565 1.19277 0.85993 0.90194 0.86411 0.81009 0.82070 0.83549 0.88195 0.74922 0.98461 0.98643 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 9.01 71.24 0.64 -2.65 16 2 C 0.39 12.59 7.20 27.89 0.20 12.79 16 3 O -0.53 -22.57 14.38 -3.12 -0.04 -22.61 16 4 C -0.30 -10.02 5.88 -20.05 -0.12 -10.13 16 5 C -0.01 -0.18 9.46 22.57 0.21 0.04 16 6 C -0.21 -4.53 10.02 22.24 0.22 -4.31 16 7 C -0.03 -0.87 10.03 22.31 0.22 -0.65 16 8 C -0.25 -9.78 9.30 22.37 0.21 -9.57 16 9 C 0.24 10.47 6.66 38.82 0.26 10.73 16 10 N -0.72 -36.96 5.57 -342.39 -1.91 -38.87 16 11 C 0.26 15.36 4.69 85.63 0.40 15.76 16 12 C -0.57 -34.40 9.28 25.60 0.24 -34.16 16 13 H 0.06 3.50 7.60 -2.91 -0.02 3.47 16 14 C 0.01 0.79 5.46 84.66 0.46 1.25 16 15 N -0.92 -56.01 13.29 21.45 0.28 -55.73 16 16 Si 0.98 45.39 29.54 68.60 2.03 47.41 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H 0.12 1.44 7.91 -2.39 -0.02 1.42 16 21 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 22 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.17 2.15 6.99 -2.91 -0.02 2.13 16 24 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 25 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 26 H 0.10 4.41 6.72 -2.91 -0.02 4.39 16 27 H 0.41 21.26 4.84 -94.56 -0.46 20.81 16 28 H 0.00 -0.15 7.72 -2.39 -0.02 -0.17 16 29 H 0.00 -0.26 8.13 -2.38 -0.02 -0.28 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.02 261.66 4.00 -70.02 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.69 Total: 20.67 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 2.95 Total: -20.90 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -1.62 Total: -94.59 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.02 4.00 -70.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033432807.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.245 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds