Wall clock time and date at job start Mon Mar 30 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47073 * 239.99552 * 3 2 1 5 5 H 1.48506 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47318 * 119.99557 * 3 2 1 7 7 C 1.37877 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00175 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.38999 * 119.99544 * 89.99594 * 10 9 7 12 12 C 1.39339 * 120.09386 * 87.97217 * 11 10 9 13 13 N 1.31923 * 119.89275 * 179.97438 * 12 11 10 14 14 C 1.32278 * 120.08345 * 0.02562 * 13 12 11 15 15 C 1.38157 * 120.19138 * 359.97438 * 14 13 12 16 16 N 1.32247 * 120.11021 * 0.27427 * 15 14 13 17 17 C 1.46491 * 120.00375 * 270.00126 * 10 9 7 18 18 C 1.52995 * 117.50258 * 183.39045 * 17 10 9 19 19 C 1.53001 * 117.50394 * 114.72879 * 17 10 9 20 20 H 0.96998 * 119.99854 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47612 * 59.99670 * 9 7 2 22 22 H 1.09000 * 109.47140 * 299.99373 * 9 7 2 23 23 H 1.08003 * 120.05767 * 359.97372 * 12 11 10 24 24 H 1.08000 * 119.90299 * 179.97438 * 14 13 12 25 25 H 1.08001 * 119.93891 * 180.02562 * 15 14 13 26 26 H 1.09008 * 115.54715 * 329.05739 * 17 10 9 27 27 H 1.08998 * 117.49678 * 0.02562 * 18 17 10 28 28 H 1.09005 * 117.50338 * 145.01565 * 18 17 10 29 29 H 1.08998 * 117.49900 * 214.98296 * 19 17 10 30 30 H 1.09003 * 117.49410 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6546 -4.1408 1.2044 12 6 1.9419 -5.1611 1.8309 13 7 2.3744 -5.6598 2.9731 14 6 3.4826 -5.1921 3.5235 15 6 4.1920 -4.1806 2.9053 16 7 3.7627 -3.6717 1.7626 17 6 2.6790 -4.1695 -1.2681 18 6 3.6099 -5.3819 -1.2025 19 6 4.1650 -4.0107 -1.5960 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 1.0367 -5.5431 1.3822 24 1 3.8338 -5.6022 4.4588 25 1 5.0965 -3.8020 3.3580 26 1 1.9728 -4.1215 -2.0970 27 1 3.8679 -5.7655 -0.2154 28 1 3.5164 -6.1314 -1.9884 29 1 4.4364 -3.8587 -2.6407 30 1 4.7886 -3.4923 -0.8676 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:37 Heat of formation + Delta-G solvation = 93.837055 kcal Electronic energy + Delta-G solvation = -14557.353204 eV Core-core repulsion = 12161.391743 eV Total energy + Delta-G solvation = -2395.961461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57367 -37.39884 -34.06146 -33.43559 -32.26422 -29.89192 -26.62701 -24.10167 -23.69106 -22.35952 -21.83985 -20.12676 -17.17571 -16.57655 -16.27914 -16.09014 -15.56795 -14.38626 -14.36291 -13.95639 -13.14691 -12.65059 -12.47534 -12.13380 -11.23253 -11.15046 -11.05947 -11.02511 -10.67567 -10.61697 -10.50090 -10.16112 -9.76579 -9.43804 -8.75022 -8.72019 -8.39745 -6.97112 -5.97158 -4.03396 1.20799 1.61004 3.34709 3.38086 3.42289 3.83075 4.13820 4.37681 4.48210 4.62670 4.89317 4.99674 5.28646 5.33895 5.37709 5.50903 5.61476 5.80044 5.85570 5.94956 6.27302 6.42517 6.57513 6.69540 7.13463 7.34238 7.67534 7.94000 8.23476 8.29156 8.37603 8.55672 9.07330 9.62422 11.07121 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.026777 B = 0.009778 C = 0.008645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.428348 B = 2862.907510 C = 3238.147922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.277 3.723 10 N -0.630 5.630 11 C 0.368 3.632 12 C 0.044 3.956 13 N -0.440 5.440 14 C 0.016 3.984 15 C 0.058 3.942 16 N -0.445 5.445 17 C 0.139 3.861 18 C -0.206 4.206 19 C -0.204 4.204 20 H 0.262 0.738 21 H 0.034 0.966 22 H 0.021 0.979 23 H 0.164 0.836 24 H 0.161 0.839 25 H 0.159 0.841 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -9.834 1.699 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.158 3.842 10 N -0.356 5.356 11 C 0.137 3.863 12 C -0.120 4.120 13 N -0.155 5.155 14 C -0.143 4.143 15 C -0.103 4.103 16 N -0.163 5.163 17 C 0.032 3.968 18 C -0.244 4.244 19 C -0.244 4.244 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.182 0.818 24 H 0.178 0.822 25 H 0.176 0.824 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.731 -9.655 1.702 11.356 hybrid contribution 0.676 1.169 0.138 1.357 sum 6.408 -8.486 1.840 10.792 Atomic orbital electron populations 1.69921 1.05938 1.26936 1.51340 1.24974 0.94823 0.99134 0.95480 0.86610 0.79507 0.82958 0.78639 1.20252 1.21414 1.20410 1.21740 0.93987 0.90810 1.49633 0.91860 1.19026 0.86086 0.81797 0.97275 1.45806 1.51582 1.40576 0.97651 1.19130 0.88864 0.89352 0.88937 1.24126 1.00740 0.94991 0.92171 1.68327 1.12099 1.25985 1.09095 1.23502 0.92903 0.96895 1.00959 1.23630 1.00188 0.94228 0.92239 1.68593 1.14276 1.24328 1.09086 1.21181 0.90810 0.96383 0.88379 1.23209 1.07142 0.92108 1.01978 1.23450 1.00847 0.98491 1.01611 0.92853 0.94837 0.96121 0.81837 0.82177 0.82418 0.86223 0.90336 0.88880 0.89368 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.67 9.39 -34.44 -0.32 -14.99 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.28 7.01 5.48 -5.19 -0.03 6.99 16 10 N -0.63 -13.37 2.80 -167.48 -0.47 -13.84 16 11 C 0.37 7.35 4.48 -154.74 -0.69 6.66 16 12 C 0.04 0.79 11.16 -17.10 -0.19 0.60 16 13 N -0.44 -7.32 10.49 -12.88 -0.14 -7.46 16 14 C 0.02 0.23 11.21 -17.39 -0.19 0.03 16 15 C 0.06 0.90 11.21 -17.40 -0.20 0.71 16 16 N -0.44 -8.84 10.53 -12.24 -0.13 -8.97 16 17 C 0.14 2.53 6.56 -67.94 -0.45 2.08 16 18 C -0.21 -3.19 9.84 -26.70 -0.26 -3.45 16 19 C -0.20 -3.50 10.37 -26.69 -0.28 -3.78 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 22 H 0.02 0.57 8.05 -51.93 -0.42 0.15 16 23 H 0.16 2.63 8.06 -52.48 -0.42 2.21 16 24 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 27 H 0.08 1.31 7.06 -51.93 -0.37 0.94 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -30.99 269.17 -7.38 -38.37 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.71 Total: 0.18 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.71 Total: -3.64 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.00 Total: -56.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.99 -7.38 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.202 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds