Wall clock time and date at job start Mon Mar 30 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47285 * 270.00446 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00469 * 3 2 1 6 6 H 1.48500 * 109.47306 * 150.00687 * 3 2 1 7 7 C 1.37881 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00065 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.39042 * 119.99819 * 270.27472 * 10 9 7 12 12 C 1.39487 * 120.15612 * 188.92702 * 11 10 9 13 13 C 1.38565 * 117.90351 * 179.76112 * 12 11 10 14 14 C 1.38813 * 118.03738 * 0.47740 * 13 12 11 15 15 N 1.31788 * 120.01748 * 359.77798 * 14 13 12 16 16 N 1.28350 * 122.28346 * 359.97010 * 15 14 13 17 17 C 1.46503 * 119.99972 * 89.99701 * 10 9 7 18 18 C 1.53001 * 117.50072 * 2.81043 * 17 10 9 19 19 C 1.53000 * 117.50052 * 294.14831 * 17 10 9 20 20 H 0.97001 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47265 * 59.99671 * 9 7 2 22 22 H 1.09001 * 109.46668 * 300.00192 * 9 7 2 23 23 H 1.07999 * 121.04889 * 359.97438 * 12 11 10 24 24 H 1.07998 * 120.98201 * 180.23341 * 13 12 11 25 25 H 1.08005 * 119.99392 * 179.75176 * 14 13 12 26 26 H 1.08997 * 115.54974 * 148.48127 * 17 10 9 27 27 H 1.08998 * 117.49508 * 359.97438 * 18 17 10 28 28 H 1.08995 * 117.49859 * 145.01828 * 18 17 10 29 29 H 1.08997 * 117.50067 * 214.98510 * 19 17 10 30 30 H 1.09005 * 117.49862 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6591 -4.1373 -1.2047 12 6 3.4151 -5.3095 -1.2167 13 6 3.8413 -5.7937 -2.4431 14 6 3.4987 -5.0779 -3.5820 15 7 2.7846 -3.9751 -3.4777 16 7 2.3823 -3.5235 -2.3456 17 6 2.6790 -4.1694 1.2682 18 6 2.0952 -3.5889 2.5578 19 6 3.5374 -3.2677 2.1576 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5568 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 3.6577 -5.8253 -0.2994 24 1 4.4262 -6.6991 -2.5105 25 1 3.8177 -5.4245 -4.5539 26 1 2.9128 -5.2340 1.2562 27 1 1.3573 -2.7924 2.4622 28 1 1.9452 -4.2714 3.3943 29 1 4.3357 -3.7390 2.7309 30 1 3.7483 -2.2603 1.7985 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052815708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:09 Heat of formation + Delta-G solvation = 78.952278 kcal Electronic energy + Delta-G solvation = -14564.117887 eV Core-core repulsion = 12167.510973 eV Total energy + Delta-G solvation = -2396.606914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.66070 -39.20838 -35.52013 -34.70162 -33.75697 -31.59660 -29.00265 -25.84800 -25.04786 -23.93614 -23.11578 -21.27016 -18.70628 -18.61017 -18.15836 -17.21701 -16.66944 -15.89389 -15.75639 -15.51826 -14.62399 -14.45181 -13.97039 -13.48297 -13.29695 -13.26998 -12.72692 -12.47863 -12.11108 -12.01234 -11.80140 -11.46204 -11.19474 -11.03396 -10.95519 -10.59830 -10.17106 -8.61114 -8.10316 -6.29798 0.16885 0.50122 1.33091 1.36761 1.44753 2.07218 2.39142 2.85889 3.09704 3.11196 3.66029 3.86933 3.91749 4.01585 4.11565 4.17048 4.24091 4.44667 4.76634 4.84885 4.96297 5.11399 5.15459 5.19301 5.26922 5.45806 5.55224 5.68728 6.09435 6.30918 6.60293 6.80150 7.37534 8.22431 8.88044 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.010646 C = 0.008437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.225166 B = 2629.541767 C = 3317.773858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.043 0.957 9 C 0.273 3.727 10 N -0.570 5.570 11 C 0.328 3.672 12 C -0.187 4.187 13 C -0.067 4.067 14 C -0.035 4.035 15 N -0.258 5.258 16 N -0.354 5.354 17 C 0.073 3.927 18 C -0.175 4.175 19 C -0.189 4.189 20 H 0.265 0.735 21 H 0.000 1.000 22 H 0.026 0.974 23 H 0.175 0.825 24 H 0.198 0.802 25 H 0.198 0.802 26 H 0.158 0.842 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -13.806 2.374 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.151 3.849 10 N -0.279 5.279 11 C 0.086 3.914 12 C -0.220 4.220 13 C -0.095 4.095 14 C -0.207 4.207 15 N -0.097 5.097 16 N -0.205 5.205 17 C -0.032 4.032 18 C -0.213 4.213 19 C -0.228 4.228 20 H 0.074 0.926 21 H 0.018 0.982 22 H 0.043 0.957 23 H 0.193 0.807 24 H 0.215 0.785 25 H 0.215 0.785 26 H 0.175 0.825 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.157 -12.313 1.801 14.880 hybrid contribution 0.587 0.363 0.433 0.814 sum 8.744 -11.950 2.234 14.975 Atomic orbital electron populations 1.70029 1.07258 1.27768 1.51769 1.25709 0.95678 1.02459 0.95038 0.85587 0.78801 0.79469 0.77984 1.20917 1.20007 1.19176 1.21539 0.92519 0.91781 1.49763 0.93857 1.18749 0.87300 0.83171 0.95639 1.46329 1.45260 1.35171 1.01148 1.20443 0.91465 0.90986 0.88489 1.22227 1.01894 0.95757 1.02139 1.22657 0.95783 1.00530 0.90560 1.24614 0.99494 0.94276 1.02293 1.72697 1.07754 1.12473 1.16805 1.73124 1.24632 1.27902 0.94807 1.21907 1.04025 0.97123 0.80113 1.23300 0.97009 1.03680 0.97302 1.23440 0.94684 1.01000 1.03705 0.92638 0.98174 0.95662 0.80729 0.78527 0.78484 0.82494 0.90866 0.84723 0.85243 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.52 -30.14 8.71 25.60 0.22 -29.92 16 8 H 0.04 2.57 7.21 -2.91 -0.02 2.55 16 9 C 0.27 14.84 4.66 85.63 0.40 15.23 16 10 N -0.57 -24.81 2.90 -683.75 -1.98 -26.79 16 11 C 0.33 13.76 7.41 133.11 0.99 14.75 16 12 C -0.19 -5.36 9.43 22.65 0.21 -5.14 16 13 C -0.07 -1.53 10.20 22.49 0.23 -1.30 16 14 C -0.04 -1.02 11.31 84.84 0.96 -0.06 16 15 N -0.26 -10.91 11.49 -57.20 -0.66 -11.57 16 16 N -0.35 -17.37 10.43 -55.10 -0.57 -17.95 16 17 C 0.07 2.33 5.98 44.99 0.27 2.60 16 18 C -0.18 -5.51 9.74 30.62 0.30 -5.21 16 19 C -0.19 -5.92 10.28 30.62 0.31 -5.61 16 20 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.00 0.01 7.56 -2.39 -0.02 -0.01 16 22 H 0.03 1.42 5.99 -2.39 -0.01 1.40 16 23 H 0.18 3.53 6.23 -2.91 -0.02 3.52 16 24 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 25 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.16 3.54 6.45 -2.39 -0.02 3.52 16 27 H 0.07 2.96 6.11 -2.39 -0.01 2.94 16 28 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.07 2.69 6.94 -2.38 -0.02 2.68 16 Total: -1.00 -76.69 259.34 4.60 -72.09 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.15 Total: 5.97 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.36 Total: -13.63 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -2.93 Total: -113.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.69 4.60 -72.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052815708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.046 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds