Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99879 * 2 1 4 4 C 1.38804 * 119.94574 * 359.71966 * 3 2 1 5 5 C 1.38131 * 119.77940 * 179.77092 * 4 3 2 6 6 C 1.38230 * 120.21856 * 0.50751 * 5 4 3 7 7 C 1.38645 * 120.56069 * 359.74528 * 6 5 4 8 8 C 1.38315 * 119.93903 * 179.97438 * 3 2 1 9 9 N 1.39585 * 111.64582 * 180.02562 * 7 6 5 10 10 C 1.46530 * 110.08706 * 0.02562 * 9 7 6 11 11 C 1.51236 * 130.91341 * 179.76704 * 6 5 4 12 12 H 1.09002 * 110.42162 * 61.21830 * 11 6 5 13 13 C 1.50693 * 110.52549 * 298.79528 * 11 6 5 14 14 H 1.08003 * 120.00264 * 3.36767 * 13 11 6 15 15 C 1.37881 * 120.00072 * 183.36383 * 13 11 6 16 16 N 1.31510 * 120.00111 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47373 * 60.00051 * 17 15 13 19 19 H 1.48500 * 109.46884 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47015 * 299.99915 * 17 15 13 21 21 H 1.09002 * 109.47382 * 300.00322 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00429 * 1 2 3 24 24 H 1.07997 * 120.10963 * 0.02562 * 4 3 2 25 25 H 1.08000 * 119.89294 * 180.25270 * 5 4 3 26 26 H 1.07997 * 119.88675 * 0.02562 * 8 3 2 27 27 H 0.97000 * 124.95675 * 179.97438 * 9 7 6 28 28 H 1.09005 * 110.29646 * 118.93246 * 10 9 7 29 29 H 1.09008 * 110.29512 * 241.06246 * 10 9 7 30 30 H 0.96997 * 120.00367 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3743 -0.0059 5 6 1.9195 3.6032 -0.0011 6 6 3.2998 3.6769 -0.0010 7 6 4.0674 2.5223 -0.0005 8 6 3.4273 1.2818 0.0005 9 7 5.4329 2.8118 0.0001 10 6 5.6398 4.2624 0.0005 11 6 4.2280 4.8709 -0.0010 12 1 4.0731 5.4731 0.8942 13 6 4.0156 5.7052 -1.2378 14 1 3.2404 5.4401 -1.9415 15 6 4.8110 6.8071 -1.4712 16 7 5.7553 7.1297 -0.6146 17 14 4.5472 7.8416 -3.0040 18 1 3.1672 8.3898 -2.9998 19 1 5.5244 8.9596 -3.0207 20 1 4.7408 6.9975 -4.2103 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2103 2.3188 -0.0100 25 1 1.3322 4.5096 -0.0015 26 1 4.0128 0.3743 0.0005 27 1 6.1415 2.1493 0.0009 28 1 6.1825 4.5667 0.8956 29 1 6.1832 4.5671 -0.8940 30 1 6.3151 7.9046 -0.7789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071487048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = -7.396221 kcal Electronic energy + Delta-G solvation = -14405.205155 eV Core-core repulsion = 11972.561138 eV Total energy + Delta-G solvation = -2432.644017 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77141 -38.21190 -34.61955 -32.93556 -30.73000 -28.60156 -27.90400 -26.36788 -24.42606 -22.16907 -20.71116 -19.92486 -17.55001 -16.26722 -16.10620 -15.34975 -15.14696 -14.86913 -14.33344 -13.73212 -13.06412 -12.75639 -12.31661 -12.08874 -11.88753 -11.77774 -11.28139 -11.01417 -10.70386 -10.62453 -10.52473 -10.22882 -9.47520 -9.42374 -8.92659 -8.51201 -7.57505 -6.46860 -6.05144 -4.12991 2.24372 2.35381 3.30109 3.34363 3.38074 3.59033 4.37655 4.47435 4.65824 5.22886 5.26471 5.35222 5.55267 5.60838 5.73583 6.03655 6.11908 6.29603 6.41120 6.59743 6.72052 6.98690 7.03253 7.21272 7.36846 7.53126 7.74734 7.85251 7.87583 8.11058 8.32912 8.69157 8.90545 9.51602 10.99380 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042513 B = 0.007854 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.470617 B = 3564.227325 C = 3987.517465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.145 3.855 4 C -0.268 4.268 5 C -0.033 4.033 6 C -0.156 4.156 7 C 0.227 3.773 8 C -0.230 4.230 9 N -0.746 5.746 10 C 0.137 3.863 11 C 0.081 3.919 12 H 0.045 0.955 13 C -0.505 4.505 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.397 0.603 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -9.110 1.558 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.101 3.899 4 C -0.289 4.289 5 C -0.052 4.052 6 C -0.160 4.160 7 C 0.120 3.880 8 C -0.254 4.254 9 N -0.375 5.375 10 C 0.014 3.986 11 C 0.063 3.937 12 H 0.063 0.937 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.070 0.930 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.232 0.768 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.355 -8.998 1.589 10.591 hybrid contribution 0.056 0.462 -0.870 0.987 sum -5.299 -8.536 0.719 10.073 Atomic orbital electron populations 1.22906 0.79310 1.02777 1.01238 1.85960 1.20634 1.27955 1.89514 1.18286 0.91333 0.83383 0.96938 1.20725 0.98696 0.92191 1.17275 1.20076 0.93073 0.96313 0.95747 1.20508 0.93422 0.95808 1.06300 1.18093 0.85532 0.92795 0.91537 1.19153 0.91320 0.95720 1.19206 1.45192 1.02584 1.08555 1.81127 1.22107 1.00441 0.75773 1.00276 1.18240 0.87270 0.89920 0.98299 0.93740 1.21043 1.17475 1.09694 1.06065 0.92195 1.24999 0.95158 0.97197 0.96719 1.69929 1.20210 1.27342 1.35686 0.86597 0.78038 0.79721 0.83348 1.20136 1.21266 1.20259 0.93015 0.89159 0.92970 0.86682 0.86442 0.86917 0.76779 0.93791 0.91195 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.33 10.49 -19.43 -0.20 -5.54 16 3 C 0.15 2.69 6.67 -39.34 -0.26 2.43 16 4 C -0.27 -4.86 9.04 -39.41 -0.36 -5.22 16 5 C -0.03 -0.67 10.03 -39.62 -0.40 -1.07 16 6 C -0.16 -3.56 5.51 -104.21 -0.57 -4.13 16 7 C 0.23 4.82 7.03 -83.68 -0.59 4.24 16 8 C -0.23 -4.46 10.01 -39.05 -0.39 -4.85 16 9 N -0.75 -15.10 6.53 -58.13 -0.38 -15.48 16 10 C 0.14 3.20 6.73 -3.64 -0.02 3.18 16 11 C 0.08 2.05 2.96 -92.28 -0.27 1.78 16 12 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.50 -13.70 8.45 -34.44 -0.29 -13.99 16 14 H 0.06 1.64 7.77 -52.48 -0.41 1.24 16 15 C 0.06 1.65 5.09 -17.82 -0.09 1.55 16 16 N -0.89 -24.73 12.35 55.43 0.68 -24.04 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 24 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 25 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 26 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.40 6.67 8.96 -40.82 -0.37 6.31 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.77 7.22 -51.92 -0.38 1.39 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -29.01 255.96 -6.84 -35.85 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.52 Total: 4.09 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.26 Total: -14.72 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.30 Total: -39.52 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.20 Total: -5.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.01 -6.84 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds