Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99879 * 2 1 4 4 C 1.38804 * 119.94574 * 359.71966 * 3 2 1 5 5 C 1.38131 * 119.77940 * 179.77092 * 4 3 2 6 6 C 1.38230 * 120.21856 * 0.50751 * 5 4 3 7 7 C 1.38645 * 120.56069 * 359.74528 * 6 5 4 8 8 C 1.38315 * 119.93903 * 179.97438 * 3 2 1 9 9 N 1.39585 * 111.64582 * 180.02562 * 7 6 5 10 10 C 1.46530 * 110.08706 * 0.02562 * 9 7 6 11 11 C 1.51236 * 130.91341 * 179.76704 * 6 5 4 12 12 H 1.09002 * 110.42162 * 61.21830 * 11 6 5 13 13 C 1.50693 * 110.52549 * 298.79528 * 11 6 5 14 14 H 1.08003 * 120.00264 * 3.36767 * 13 11 6 15 15 C 1.37881 * 120.00072 * 183.36383 * 13 11 6 16 16 N 1.31510 * 120.00111 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47373 * 60.00051 * 17 15 13 19 19 H 1.48500 * 109.46884 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47015 * 299.99915 * 17 15 13 21 21 H 1.09002 * 109.47382 * 300.00322 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00429 * 1 2 3 24 24 H 1.07997 * 120.10963 * 0.02562 * 4 3 2 25 25 H 1.08000 * 119.89294 * 180.25270 * 5 4 3 26 26 H 1.07997 * 119.88675 * 0.02562 * 8 3 2 27 27 H 0.97000 * 124.95675 * 179.97438 * 9 7 6 28 28 H 1.09005 * 110.29646 * 118.93246 * 10 9 7 29 29 H 1.09008 * 110.29512 * 241.06246 * 10 9 7 30 30 H 0.96997 * 120.00367 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3743 -0.0059 5 6 1.9195 3.6032 -0.0011 6 6 3.2998 3.6769 -0.0010 7 6 4.0674 2.5223 -0.0005 8 6 3.4273 1.2818 0.0005 9 7 5.4329 2.8118 0.0001 10 6 5.6398 4.2624 0.0005 11 6 4.2280 4.8709 -0.0010 12 1 4.0731 5.4731 0.8942 13 6 4.0156 5.7052 -1.2378 14 1 3.2404 5.4401 -1.9415 15 6 4.8110 6.8071 -1.4712 16 7 5.7553 7.1297 -0.6146 17 14 4.5472 7.8416 -3.0040 18 1 3.1672 8.3898 -2.9998 19 1 5.5244 8.9596 -3.0207 20 1 4.7408 6.9975 -4.2103 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2103 2.3188 -0.0100 25 1 1.3322 4.5096 -0.0015 26 1 4.0128 0.3743 0.0005 27 1 6.1415 2.1493 0.0009 28 1 6.1825 4.5667 0.8956 29 1 6.1832 4.5671 -0.8940 30 1 6.3151 7.9046 -0.7789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071487048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = -25.935164 kcal Electronic energy + Delta-G solvation = -14406.009063 eV Core-core repulsion = 11972.561138 eV Total energy + Delta-G solvation = -2433.447926 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29070 -39.64944 -36.20890 -34.86990 -32.43772 -30.20632 -29.41731 -27.64003 -26.38045 -23.76324 -22.35439 -21.61568 -19.00545 -18.28042 -17.61991 -16.82737 -16.50483 -16.27444 -16.10476 -15.55907 -14.51473 -14.25562 -14.06376 -13.79548 -13.34556 -13.21136 -12.93256 -12.84289 -12.46280 -12.41335 -11.97512 -11.74356 -11.39282 -11.23578 -10.64174 -10.53645 -9.09426 -8.26877 -7.95798 -6.26342 0.68159 0.81006 1.43345 1.44032 1.52205 2.29647 2.42916 2.96500 3.05292 3.16568 4.02905 4.28115 4.37963 4.42990 4.50991 4.62368 4.66644 4.75491 4.79671 4.82550 5.04534 5.25238 5.42095 5.58902 5.61695 5.71262 5.79134 5.99932 6.28405 6.30173 6.65833 6.79660 7.20473 7.41427 8.92498 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042513 B = 0.007854 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.470617 B = 3564.227325 C = 3987.517465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.152 3.848 4 C -0.258 4.258 5 C -0.040 4.040 6 C -0.195 4.195 7 C 0.214 3.786 8 C -0.233 4.233 9 N -0.739 5.739 10 C 0.153 3.847 11 C 0.076 3.924 12 H 0.013 0.987 13 C -0.522 4.522 14 H 0.051 0.949 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.275 1.275 21 H 0.063 0.937 22 H 0.122 0.878 23 H 0.060 0.940 24 H 0.150 0.850 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.413 0.587 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.226 -10.553 0.974 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.107 3.893 4 C -0.279 4.279 5 C -0.059 4.059 6 C -0.199 4.199 7 C 0.108 3.892 8 C -0.257 4.257 9 N -0.370 5.370 10 C 0.028 3.972 11 C 0.057 3.943 12 H 0.031 0.969 13 C -0.560 4.560 14 H 0.069 0.931 15 C -0.182 4.182 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.200 1.200 21 H 0.081 0.919 22 H 0.140 0.860 23 H 0.079 0.921 24 H 0.167 0.833 25 H 0.139 0.861 26 H 0.149 0.851 27 H 0.252 0.748 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.865 -10.476 1.009 12.566 hybrid contribution 0.383 0.796 -0.650 1.097 sum -6.482 -9.681 0.359 11.656 Atomic orbital electron populations 1.23316 0.76565 1.05341 1.02185 1.85971 1.23385 1.26520 1.88922 1.18398 0.91260 0.84425 0.95252 1.21015 1.00413 0.90985 1.15468 1.20269 0.92361 0.97698 0.95568 1.20492 0.94541 0.95203 1.09700 1.18211 0.85482 0.93208 0.92264 1.19365 0.92230 0.95473 1.18599 1.44933 1.03103 1.07478 1.81523 1.21637 0.99052 0.77686 0.98805 1.18108 0.89225 0.90707 0.96224 0.96902 1.21253 1.17447 1.10571 1.06688 0.93103 1.25717 0.94839 0.98189 0.99450 1.70031 1.20743 1.27718 1.37111 0.85635 0.78173 0.78205 0.79817 1.19539 1.20594 1.20016 0.91874 0.86019 0.92098 0.83278 0.86115 0.85089 0.74819 0.94227 0.93563 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.70 10.49 -92.44 -0.97 -10.67 16 3 C 0.15 5.23 6.67 22.42 0.15 5.38 16 4 C -0.26 -8.71 9.04 22.38 0.20 -8.51 16 5 C -0.04 -1.61 10.03 22.24 0.22 -1.39 16 6 C -0.19 -9.01 5.51 -19.60 -0.11 -9.12 16 7 C 0.21 9.04 7.03 38.33 0.27 9.31 16 8 C -0.23 -8.62 10.01 22.61 0.23 -8.39 16 9 N -0.74 -30.08 6.53 -337.83 -2.21 -32.28 16 10 C 0.15 7.37 6.73 86.62 0.58 7.95 16 11 C 0.08 3.99 2.96 -11.87 -0.04 3.95 16 12 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 13 C -0.52 -29.10 8.45 25.60 0.22 -28.88 16 14 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 15 C 0.02 0.96 5.09 84.66 0.43 1.39 16 16 N -0.92 -51.94 12.35 21.45 0.26 -51.67 16 17 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16 22 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.07 7.65 -2.38 -0.02 1.05 16 24 H 0.15 3.93 6.30 -2.91 -0.02 3.91 16 25 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 26 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 27 H 0.41 13.72 8.96 -92.71 -0.83 12.89 16 28 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 2.43 7.22 -2.38 -0.02 2.41 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -62.57 255.96 2.70 -59.86 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.32 Total: 16.20 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.27 Total: -26.82 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.94 Total: -83.96 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.97 Total: -10.67 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -62.57 2.70 -59.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.925 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds