Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36009 * 117.00151 * 2 1 4 4 C 1.38329 * 119.94643 * 0.02562 * 3 2 1 5 5 C 1.38273 * 120.19937 * 180.02562 * 4 3 2 6 6 C 1.38282 * 119.92236 * 0.10757 * 5 4 3 7 7 C 1.37678 * 120.31015 * 0.02562 * 6 5 4 8 8 C 1.39248 * 120.43642 * 359.69568 * 7 6 5 9 9 N 1.40328 * 111.02478 * 180.42956 * 8 7 6 10 10 C 1.47909 * 107.85024 * 341.94965 * 9 8 7 11 11 C 1.51579 * 131.82894 * 179.78609 * 7 6 5 12 12 H 1.09005 * 110.73318 * 314.63771 * 11 7 6 13 13 C 1.50694 * 110.73626 * 77.76872 * 11 7 6 14 14 H 1.08000 * 120.00563 * 357.52136 * 13 11 7 15 15 C 1.37885 * 119.99902 * 177.52300 * 13 11 7 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.09003 * 109.47171 * 60.00361 * 1 2 3 22 22 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47389 * 300.00161 * 1 2 3 24 24 H 1.07999 * 119.89662 * 0.02562 * 4 3 2 25 25 H 1.08010 * 120.03770 * 180.08121 * 5 4 3 26 26 H 1.08003 * 119.91280 * 179.97438 * 6 5 4 27 27 H 1.00901 * 111.00479 * 103.74842 * 9 8 7 28 28 H 1.08999 * 110.77785 * 268.85838 * 10 9 8 29 29 H 1.08999 * 110.94165 * 145.49788 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3713 0.0005 5 6 1.9143 3.6060 0.0000 6 6 3.2950 3.6826 -0.0033 7 6 4.0546 2.5343 -0.0066 8 6 3.4425 1.2836 -0.0003 9 7 4.3976 0.2556 0.0046 10 6 5.6868 0.8324 -0.4347 11 6 5.5543 2.3143 -0.0148 12 1 6.0360 2.9664 -0.7435 13 6 6.1332 2.5334 1.3591 14 1 5.4938 2.8475 2.1708 15 6 7.4794 2.3329 1.5800 16 7 8.2581 1.9500 0.5917 17 14 8.1972 2.6052 3.2829 18 1 9.6551 2.3239 3.2564 19 1 7.9718 4.0137 3.6957 20 1 7.5352 1.6938 4.2506 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2136 2.3118 0.0014 25 1 1.3227 4.5097 0.0018 26 1 3.7810 4.6471 -0.0042 27 1 4.4800 -0.1572 0.9217 28 1 5.8012 0.7453 -1.5151 29 1 6.5218 0.3577 0.0806 30 1 9.2052 1.8094 0.7470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071487076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = -4.421603 kcal Electronic energy + Delta-G solvation = -14596.481558 eV Core-core repulsion = 12163.966531 eV Total energy + Delta-G solvation = -2432.515028 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95709 -37.92122 -35.23024 -32.78505 -30.24177 -28.66023 -27.66967 -26.66707 -24.45877 -21.77246 -20.85404 -19.92230 -17.32729 -16.26302 -15.94387 -15.44905 -15.24803 -14.71726 -14.26815 -13.71488 -13.62554 -12.57723 -12.39423 -12.04814 -11.89274 -11.37292 -11.18924 -10.99116 -10.67657 -10.60468 -10.55040 -10.22943 -9.68605 -9.39022 -8.98868 -8.42607 -7.69661 -6.91705 -6.13919 -4.21687 1.99233 2.11671 3.25568 3.30492 3.33540 3.74506 4.29254 4.45483 4.78823 5.16640 5.21640 5.33624 5.44260 5.58662 5.70116 5.76970 6.03680 6.26525 6.36426 6.53912 6.67998 6.97322 7.04338 7.17433 7.28855 7.47161 7.55908 7.70692 7.80649 8.07562 8.15878 8.33162 8.80797 9.43295 10.92134 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.008456 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.619737 B = 3310.496503 C = 3502.885746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.113 3.887 4 C -0.212 4.212 5 C -0.109 4.109 6 C -0.130 4.130 7 C -0.064 4.064 8 C 0.063 3.937 9 N -0.628 5.628 10 C 0.065 3.935 11 C 0.056 3.944 12 H 0.048 0.952 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.048 0.952 22 H 0.091 0.909 23 H 0.048 0.952 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.345 0.655 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.252 -0.589 -0.693 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.128 4.128 6 C -0.149 4.149 7 C -0.067 4.067 8 C -0.036 4.036 9 N -0.256 5.256 10 C -0.063 4.063 11 C 0.037 3.963 12 H 0.066 0.934 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.724 3.276 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.067 0.933 22 H 0.110 0.890 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.169 0.831 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.093 -1.198 -1.345 11.239 hybrid contribution 0.394 0.840 1.614 1.862 sum -10.699 -0.358 0.269 10.709 Atomic orbital electron populations 1.22915 0.80010 1.02982 1.00673 1.86158 1.19886 1.27225 1.89403 1.18474 0.89590 0.84094 1.01215 1.20737 0.98852 0.92123 1.11375 1.20677 0.94283 0.96308 1.01490 1.20259 0.92829 0.97936 1.03865 1.21614 0.98570 0.91855 0.94672 1.19064 0.89111 0.91893 1.03519 1.58726 1.06962 1.29236 1.30637 1.22995 0.88598 0.96178 0.98553 1.19009 0.85058 0.94103 0.98131 0.93371 1.20907 0.93182 1.46894 0.93997 0.92411 1.24980 0.96859 0.94793 0.97183 1.69933 1.05532 1.45805 1.31163 0.86572 0.77930 0.78885 0.84191 1.21105 1.20133 1.20167 0.93294 0.89020 0.93333 0.86192 0.86569 0.86571 0.83065 0.92876 0.88702 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.59 10.50 -19.77 -0.21 -5.80 16 3 C 0.11 2.20 6.71 -38.97 -0.26 1.94 16 4 C -0.21 -3.58 9.02 -39.53 -0.36 -3.93 16 5 C -0.11 -1.85 10.05 -39.55 -0.40 -2.25 16 6 C -0.13 -2.60 10.01 -39.77 -0.40 -2.99 16 7 C -0.06 -1.47 5.54 -104.02 -0.58 -2.04 16 8 C 0.06 1.39 6.72 -83.01 -0.56 0.83 16 9 N -0.63 -14.06 7.20 -56.31 -0.41 -14.47 16 10 C 0.06 1.55 6.96 -2.43 -0.02 1.53 16 11 C 0.06 1.42 2.94 -91.66 -0.27 1.15 16 12 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.51 -13.81 8.58 -34.44 -0.30 -14.10 16 14 H 0.06 1.58 7.77 -52.49 -0.41 1.17 16 15 C 0.06 1.73 5.13 -17.82 -0.09 1.63 16 16 N -0.89 -24.47 12.05 55.43 0.67 -23.80 16 17 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 24 H 0.12 1.63 6.26 -52.49 -0.33 1.30 16 25 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 26 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 27 H 0.35 7.49 8.86 -39.29 -0.35 7.14 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 2.42 6.68 -51.93 -0.35 2.07 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -28.91 255.82 -6.82 -35.72 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.48 Total: 5.55 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.23 Total: -16.89 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.26 Total: -38.27 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.21 Total: -5.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.91 -6.82 -35.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds