Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36009 * 117.00151 * 2 1 4 4 C 1.38329 * 119.94643 * 0.02562 * 3 2 1 5 5 C 1.38273 * 120.19937 * 180.02562 * 4 3 2 6 6 C 1.38282 * 119.92236 * 0.10757 * 5 4 3 7 7 C 1.37678 * 120.31015 * 0.02562 * 6 5 4 8 8 C 1.39248 * 120.43642 * 359.69568 * 7 6 5 9 9 N 1.40328 * 111.02478 * 180.42956 * 8 7 6 10 10 C 1.47909 * 107.85024 * 341.94965 * 9 8 7 11 11 C 1.51579 * 131.82894 * 179.78609 * 7 6 5 12 12 H 1.09005 * 110.73318 * 314.63771 * 11 7 6 13 13 C 1.50694 * 110.73626 * 77.76872 * 11 7 6 14 14 H 1.08000 * 120.00563 * 357.52136 * 13 11 7 15 15 C 1.37885 * 119.99902 * 177.52300 * 13 11 7 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.09003 * 109.47171 * 60.00361 * 1 2 3 22 22 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47389 * 300.00161 * 1 2 3 24 24 H 1.07999 * 119.89662 * 0.02562 * 4 3 2 25 25 H 1.08010 * 120.03770 * 180.08121 * 5 4 3 26 26 H 1.08003 * 119.91280 * 179.97438 * 6 5 4 27 27 H 1.00901 * 111.00479 * 103.74842 * 9 8 7 28 28 H 1.08999 * 110.77785 * 268.85838 * 10 9 8 29 29 H 1.08999 * 110.94165 * 145.49788 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3713 0.0005 5 6 1.9143 3.6060 0.0000 6 6 3.2950 3.6826 -0.0033 7 6 4.0546 2.5343 -0.0066 8 6 3.4425 1.2836 -0.0003 9 7 4.3976 0.2556 0.0046 10 6 5.6868 0.8324 -0.4347 11 6 5.5543 2.3143 -0.0148 12 1 6.0360 2.9664 -0.7435 13 6 6.1332 2.5334 1.3591 14 1 5.4938 2.8475 2.1708 15 6 7.4794 2.3329 1.5800 16 7 8.2581 1.9500 0.5917 17 14 8.1972 2.6052 3.2829 18 1 9.6551 2.3239 3.2564 19 1 7.9718 4.0137 3.6957 20 1 7.5352 1.6938 4.2506 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2136 2.3118 0.0014 25 1 1.3227 4.5097 0.0018 26 1 3.7810 4.6471 -0.0042 27 1 4.4800 -0.1572 0.9217 28 1 5.8012 0.7453 -1.5151 29 1 6.5218 0.3577 0.0806 30 1 9.2052 1.8094 0.7470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071487076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = -23.415222 kcal Electronic energy + Delta-G solvation = -14597.305184 eV Core-core repulsion = 12163.966531 eV Total energy + Delta-G solvation = -2433.338653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.48787 -39.38472 -36.78002 -34.77985 -31.90684 -30.13989 -29.38864 -27.82453 -26.45468 -23.38257 -22.42958 -21.58228 -18.94890 -18.09825 -17.50873 -16.94964 -16.61226 -16.50124 -15.79797 -15.20427 -15.16203 -14.44227 -13.95841 -13.56577 -13.34799 -13.07144 -12.80442 -12.78379 -12.31305 -12.16183 -12.00811 -11.88902 -11.54605 -11.31685 -10.83288 -10.32129 -9.23204 -8.55668 -8.18007 -6.35005 0.48699 0.61308 1.40097 1.40567 1.49178 2.37377 2.52800 2.89651 3.06181 3.18635 4.06366 4.11695 4.29966 4.46441 4.48174 4.49244 4.56935 4.69739 4.78733 4.82340 5.06743 5.29369 5.35440 5.46257 5.54859 5.68537 5.82614 5.89544 6.08068 6.17037 6.45291 6.70704 6.73359 7.33170 8.85836 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.008456 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.619737 B = 3310.496503 C = 3502.885746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.090 4.090 6 C -0.148 4.148 7 C -0.094 4.094 8 C 0.026 3.974 9 N -0.623 5.623 10 C 0.076 3.924 11 C 0.053 3.947 12 H 0.015 0.985 13 C -0.527 4.527 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.960 3.040 18 H -0.279 1.279 19 H -0.271 1.271 20 H -0.272 1.272 21 H 0.065 0.935 22 H 0.115 0.885 23 H 0.065 0.935 24 H 0.164 0.836 25 H 0.161 0.839 26 H 0.119 0.881 27 H 0.343 0.657 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 -0.096 0.078 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.219 4.219 5 C -0.109 4.109 6 C -0.167 4.167 7 C -0.097 4.097 8 C -0.072 4.072 9 N -0.251 5.251 10 C -0.053 4.053 11 C 0.033 3.967 12 H 0.033 0.967 13 C -0.564 4.564 14 H 0.066 0.934 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.785 3.215 18 H -0.204 1.204 19 H -0.197 1.197 20 H -0.197 1.197 21 H 0.084 0.916 22 H 0.133 0.867 23 H 0.084 0.916 24 H 0.182 0.818 25 H 0.179 0.821 26 H 0.137 0.863 27 H 0.166 0.834 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.770 -0.702 -0.581 13.800 hybrid contribution 1.050 0.688 1.335 1.832 sum -12.720 -0.014 0.754 12.743 Atomic orbital electron populations 1.23325 0.76812 1.05269 1.02230 1.86130 1.23167 1.26615 1.89060 1.18625 0.88797 0.85746 1.00094 1.21234 1.00877 0.90865 1.08913 1.21145 0.93021 0.98265 0.98430 1.20499 0.94452 0.97129 1.04577 1.21500 0.97091 0.93603 0.97510 1.19272 0.90529 0.91212 1.06150 1.58753 1.06169 1.29543 1.30617 1.22700 0.89056 0.95597 0.97916 1.18865 0.87249 0.93998 0.96556 0.96687 1.21080 0.93600 1.47193 0.94564 0.93367 1.25726 0.97098 0.94374 1.00753 1.70041 1.05743 1.46297 1.32972 0.85585 0.77316 0.78847 0.79793 1.20422 1.19665 1.19704 0.91609 0.86692 0.91633 0.81825 0.82144 0.86269 0.83381 0.93261 0.90795 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.18 10.50 -93.65 -0.98 -12.17 16 3 C 0.11 4.22 6.71 22.67 0.15 4.38 16 4 C -0.20 -5.93 9.02 22.30 0.20 -5.72 16 5 C -0.09 -2.74 10.05 22.29 0.22 -2.51 16 6 C -0.15 -5.77 10.01 22.15 0.22 -5.55 16 7 C -0.09 -4.39 5.54 -19.47 -0.11 -4.50 16 8 C 0.03 1.17 6.72 38.40 0.26 1.43 16 9 N -0.62 -28.82 7.20 -332.07 -2.39 -31.21 16 10 C 0.08 3.84 6.96 86.65 0.60 4.44 16 11 C 0.05 2.80 2.94 -11.47 -0.03 2.77 16 12 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 13 C -0.53 -29.42 8.58 25.60 0.22 -29.20 16 14 H 0.05 2.71 7.77 -2.91 -0.02 2.69 16 15 C 0.02 1.13 5.13 84.66 0.43 1.56 16 16 N -0.91 -51.97 12.05 21.45 0.26 -51.71 16 17 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 22 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 24 H 0.16 3.40 6.26 -2.91 -0.02 3.38 16 25 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 26 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.34 15.45 8.86 -89.69 -0.79 14.66 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 3.99 6.68 -2.39 -0.02 3.97 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -64.43 255.82 2.55 -61.88 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.36 Total: 19.34 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.28 Total: -31.45 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.13 Total: -82.92 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.98 Total: -12.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.43 2.55 -61.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.469 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds