Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36234 * 119.13404 * 2 1 4 4 C 1.36100 * 121.36068 * 179.97438 * 3 2 1 5 5 C 1.39412 * 120.70149 * 359.73017 * 4 3 2 6 6 C 1.40398 * 119.33277 * 0.54367 * 5 4 3 7 7 C 1.40517 * 121.04254 * 179.73500 * 6 5 4 8 8 H 1.07997 * 119.99713 * 155.13883 * 7 6 5 9 9 C 1.40036 * 120.00086 * 335.41769 * 7 6 5 10 10 N 1.30852 * 119.99848 * 343.14599 * 9 7 6 11 11 Si 1.86799 * 120.00227 * 163.15027 * 9 7 6 12 12 H 1.48503 * 109.47036 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46951 * 119.99693 * 11 9 7 14 14 H 1.48493 * 109.47214 * 239.99740 * 11 9 7 15 15 C 1.34467 * 119.13913 * 179.97438 * 2 1 3 16 16 O 1.21782 * 120.51812 * 359.97438 * 15 2 1 17 17 C 1.51585 * 110.14593 * 180.02562 * 4 3 2 18 18 C 1.54321 * 105.05636 * 17.22418 * 17 4 3 19 19 C 1.51772 * 128.76631 * 359.95115 * 3 2 1 20 20 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47182 * 300.01911 * 1 2 3 22 22 H 1.08997 * 109.46960 * 60.02471 * 1 2 3 23 23 H 1.07999 * 120.33558 * 180.30775 * 5 4 3 24 24 H 0.97000 * 119.99412 * 180.02562 * 10 9 7 25 25 H 1.09001 * 110.32750 * 136.12144 * 17 4 3 26 26 H 1.09005 * 110.32365 * 258.33039 * 17 4 3 27 27 H 1.08997 * 110.91549 * 91.91842 * 18 17 4 28 28 H 1.08996 * 110.91891 * 215.51508 * 18 17 4 29 29 H 1.08996 * 110.30733 * 281.66294 * 19 3 2 30 30 H 1.08996 * 110.31058 * 43.83564 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1283 1.1900 0.0000 4 6 3.4883 1.2429 0.0005 5 6 4.2461 0.0727 0.0067 6 6 3.5927 -1.1699 0.0008 7 6 4.3210 -2.3716 0.0012 8 1 3.8734 -3.2742 0.3903 9 6 5.6293 -2.3976 -0.4975 10 7 6.0608 -1.4205 -1.2534 11 14 6.7584 -3.8271 -0.0840 12 1 6.0360 -4.7943 0.7809 13 1 7.1810 -4.5026 -1.3371 14 1 7.9558 -3.3206 0.6334 15 6 2.1198 -1.1745 0.0005 16 8 1.5046 -2.2255 0.0015 17 6 3.9547 2.6852 0.0010 18 6 2.7235 3.5045 0.4420 19 6 1.5573 2.5962 -0.0010 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5142 0.8899 22 1 -0.3633 0.5134 -0.8902 23 1 5.3250 0.1216 0.0121 24 1 6.9669 -1.4387 -1.5991 25 1 4.7719 2.8186 0.7098 26 1 4.2682 2.9820 -0.9999 27 1 2.7176 3.6468 1.5226 28 1 2.6885 4.4633 -0.0751 29 1 1.2243 2.8685 -1.0025 30 1 0.7313 2.6696 0.7063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082673416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = -20.914251 kcal Electronic energy + Delta-G solvation = -14742.454395 eV Core-core repulsion = 12309.224193 eV Total energy + Delta-G solvation = -2433.230203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78899 -37.02498 -34.64067 -34.00253 -31.68373 -28.24084 -27.34768 -26.12121 -24.65635 -21.44666 -20.53723 -19.85354 -17.27430 -16.18334 -15.48706 -15.15016 -14.81467 -14.41532 -14.24470 -13.08652 -12.74386 -12.43622 -12.14064 -11.97644 -11.71123 -11.54683 -11.29746 -11.20890 -10.89740 -10.58047 -10.52687 -10.36704 -9.80066 -9.62658 -9.33675 -8.53395 -8.16395 -6.89806 -6.58335 -4.16566 2.39714 3.06067 3.07004 3.14275 3.41068 3.83718 4.01019 4.47091 5.18902 5.29301 5.43147 5.45427 5.63849 5.87421 6.00201 6.03036 6.12654 6.20421 6.29763 6.38179 6.42821 6.63131 6.67512 6.97152 7.11372 7.46670 7.78072 7.87182 8.14935 8.44113 8.54727 8.78182 8.80231 9.48228 10.09350 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033471 B = 0.010361 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.332815 B = 2701.772964 C = 3433.009288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.480 5.480 3 C -0.065 4.065 4 C -0.090 4.090 5 C -0.214 4.214 6 C 0.023 3.977 7 C -0.397 4.397 8 H 0.087 0.913 9 C 0.065 3.935 10 N -0.774 5.774 11 Si 0.916 3.084 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.270 1.270 15 C 0.499 3.501 16 O -0.583 6.583 17 C -0.066 4.066 18 C -0.116 4.116 19 C -0.048 4.048 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.121 0.879 24 H 0.282 0.718 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 7.323 1.650 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.195 5.195 3 C -0.167 4.167 4 C -0.095 4.095 5 C -0.237 4.237 6 C 0.017 3.983 7 C -0.426 4.426 8 H 0.105 0.895 9 C -0.154 4.154 10 N -0.399 5.399 11 Si 0.740 3.260 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.195 1.195 15 C 0.299 3.701 16 O -0.468 6.468 17 C -0.104 4.104 18 C -0.154 4.154 19 C -0.086 4.086 20 H 0.106 0.894 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.139 0.861 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.594 6.773 1.502 7.406 hybrid contribution 0.477 -0.480 -0.073 0.681 sum -2.117 6.292 1.429 6.791 Atomic orbital electron populations 1.21753 0.81194 1.04016 1.00864 1.44179 1.06431 1.05634 1.63296 1.19808 0.92407 0.85834 1.18603 1.19538 0.91834 0.94418 1.03671 1.20573 0.99289 0.88845 1.14999 1.19390 0.87647 0.94770 0.96542 1.19366 0.96135 0.95956 1.31175 0.89468 1.26002 0.98663 0.97739 0.93030 1.69862 1.17631 1.30861 1.21508 0.86110 0.79554 0.80933 0.79389 1.18087 1.19799 1.19541 1.19330 0.89925 0.81573 0.79248 1.90655 1.69886 1.30194 1.56061 1.20808 0.96940 0.91968 1.00662 1.22199 0.95202 0.97294 1.00655 1.20707 0.97372 0.90369 1.00122 0.89403 0.92378 0.92513 0.86097 0.90678 0.91907 0.91566 0.91535 0.91533 0.92182 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 10.08 59.85 0.60 1.79 16 2 N -0.48 -11.14 2.99 -119.55 -0.36 -11.50 16 3 C -0.07 -1.40 6.78 -80.88 -0.55 -1.95 16 4 C -0.09 -2.04 6.05 -104.52 -0.63 -2.68 16 5 C -0.21 -5.61 8.80 -38.33 -0.34 -5.95 16 6 C 0.02 0.63 5.74 -104.55 -0.60 0.03 16 7 C -0.40 -11.11 8.81 -38.05 -0.34 -11.44 16 8 H 0.09 2.46 7.79 -52.49 -0.41 2.05 16 9 C 0.06 1.65 5.18 -17.30 -0.09 1.56 16 10 N -0.77 -19.98 10.96 55.55 0.61 -19.37 16 11 Si 0.92 18.95 29.59 -169.99 -5.03 13.92 16 12 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 14 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 15 C 0.50 13.64 7.62 -12.72 -0.10 13.54 16 16 O -0.58 -16.93 15.91 5.12 0.08 -16.85 16 17 C -0.07 -1.16 6.78 -26.76 -0.18 -1.35 16 18 C -0.12 -1.67 7.11 -25.35 -0.18 -1.85 16 19 C -0.05 -0.77 6.22 -26.67 -0.17 -0.94 16 20 H 0.09 1.69 6.84 -51.93 -0.35 1.34 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.12 3.26 6.21 -52.49 -0.33 2.93 16 24 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -30.71 254.19 -7.04 -37.75 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.60 Total: 1.45 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.56 Total: -9.24 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.25 Total: -30.86 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.08 Total: -16.85 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.71 -7.04 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082673416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.836 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds