Wall clock time and date at job start Mon Mar 30 2020 02:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36234 * 119.13404 * 2 1 4 4 C 1.36100 * 121.36068 * 179.97438 * 3 2 1 5 5 C 1.39412 * 120.70149 * 359.73017 * 4 3 2 6 6 C 1.40398 * 119.33277 * 0.54367 * 5 4 3 7 7 C 1.40517 * 121.04254 * 179.73500 * 6 5 4 8 8 H 1.07997 * 119.99713 * 155.13883 * 7 6 5 9 9 C 1.40036 * 120.00086 * 335.41769 * 7 6 5 10 10 N 1.30852 * 119.99848 * 343.14599 * 9 7 6 11 11 Si 1.86799 * 120.00227 * 163.15027 * 9 7 6 12 12 H 1.48503 * 109.47036 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46951 * 119.99693 * 11 9 7 14 14 H 1.48493 * 109.47214 * 239.99740 * 11 9 7 15 15 C 1.34467 * 119.13913 * 179.97438 * 2 1 3 16 16 O 1.21782 * 120.51812 * 359.97438 * 15 2 1 17 17 C 1.51585 * 110.14593 * 180.02562 * 4 3 2 18 18 C 1.54321 * 105.05636 * 17.22418 * 17 4 3 19 19 C 1.51772 * 128.76631 * 359.95115 * 3 2 1 20 20 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47182 * 300.01911 * 1 2 3 22 22 H 1.08997 * 109.46960 * 60.02471 * 1 2 3 23 23 H 1.07999 * 120.33558 * 180.30775 * 5 4 3 24 24 H 0.97000 * 119.99412 * 180.02562 * 10 9 7 25 25 H 1.09001 * 110.32750 * 136.12144 * 17 4 3 26 26 H 1.09005 * 110.32365 * 258.33039 * 17 4 3 27 27 H 1.08997 * 110.91549 * 91.91842 * 18 17 4 28 28 H 1.08996 * 110.91891 * 215.51508 * 18 17 4 29 29 H 1.08996 * 110.30733 * 281.66294 * 19 3 2 30 30 H 1.08996 * 110.31058 * 43.83564 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1283 1.1900 0.0000 4 6 3.4883 1.2429 0.0005 5 6 4.2461 0.0727 0.0067 6 6 3.5927 -1.1699 0.0008 7 6 4.3210 -2.3716 0.0012 8 1 3.8734 -3.2742 0.3903 9 6 5.6293 -2.3976 -0.4975 10 7 6.0608 -1.4205 -1.2534 11 14 6.7584 -3.8271 -0.0840 12 1 6.0360 -4.7943 0.7809 13 1 7.1810 -4.5026 -1.3371 14 1 7.9558 -3.3206 0.6334 15 6 2.1198 -1.1745 0.0005 16 8 1.5046 -2.2255 0.0015 17 6 3.9547 2.6852 0.0010 18 6 2.7235 3.5045 0.4420 19 6 1.5573 2.5962 -0.0010 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5142 0.8899 22 1 -0.3633 0.5134 -0.8902 23 1 5.3250 0.1216 0.0121 24 1 6.9669 -1.4387 -1.5991 25 1 4.7719 2.8186 0.7098 26 1 4.2682 2.9820 -0.9999 27 1 2.7176 3.6468 1.5226 28 1 2.6885 4.4633 -0.0751 29 1 1.2243 2.8685 -1.0025 30 1 0.7313 2.6696 0.7063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082673416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:58 Heat of formation + Delta-G solvation = -40.083105 kcal Electronic energy + Delta-G solvation = -14743.285619 eV Core-core repulsion = 12309.224193 eV Total energy + Delta-G solvation = -2434.061426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65220 -38.77621 -36.53522 -35.79962 -33.51088 -30.00412 -28.85376 -27.79730 -26.46303 -23.25062 -22.36690 -21.30620 -19.16473 -18.04783 -17.29058 -16.84194 -16.53285 -16.31159 -15.74080 -14.85536 -14.40858 -14.10834 -13.74751 -13.50584 -13.41963 -13.07465 -13.02058 -12.86440 -12.35498 -12.23377 -12.14669 -11.83987 -11.64087 -11.25871 -11.12402 -10.55703 -10.07731 -8.78542 -8.47310 -6.17505 0.53861 1.34380 1.36709 1.43523 1.50881 2.09610 2.24356 2.56626 3.44940 3.76608 3.92479 4.10034 4.31192 4.47064 4.48769 4.60452 4.73331 4.78467 4.91172 5.01971 5.08665 5.13322 5.22946 5.28040 5.48920 5.64885 5.80339 5.92750 6.21667 6.44793 6.61454 6.79426 6.84444 7.47904 8.26373 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033471 B = 0.010361 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.332815 B = 2701.772964 C = 3433.009288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.481 5.481 3 C -0.036 4.036 4 C -0.136 4.136 5 C -0.201 4.201 6 C -0.028 4.028 7 C -0.452 4.452 8 H 0.062 0.938 9 C 0.028 3.972 10 N -0.810 5.810 11 Si 0.989 3.011 12 H -0.266 1.266 13 H -0.260 1.260 14 H -0.253 1.253 15 C 0.474 3.526 16 O -0.620 6.620 17 C -0.064 4.064 18 C -0.102 4.102 19 C -0.047 4.047 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.292 0.708 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 10.492 1.835 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.193 5.193 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.224 4.224 6 C -0.033 4.033 7 C -0.482 4.482 8 H 0.080 0.920 9 C -0.187 4.187 10 N -0.436 5.436 11 Si 0.808 3.192 12 H -0.190 1.190 13 H -0.185 1.185 14 H -0.177 1.177 15 C 0.275 3.725 16 O -0.510 6.510 17 C -0.102 4.102 18 C -0.139 4.139 19 C -0.084 4.084 20 H 0.089 0.911 21 H 0.113 0.887 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.421 9.989 1.686 10.692 hybrid contribution 0.531 -1.197 -0.127 1.316 sum -2.890 8.792 1.559 9.385 Atomic orbital electron populations 1.22102 0.77934 1.04161 1.04169 1.44421 1.08792 1.05213 1.60880 1.21024 0.92794 0.87590 1.12470 1.20139 0.92751 0.96151 1.04971 1.20719 0.98975 0.89954 1.12794 1.19747 0.88702 0.95746 0.99107 1.19361 0.98347 0.95505 1.35008 0.91993 1.26778 0.99110 1.00675 0.92111 1.69859 1.18549 1.32752 1.22436 0.85070 0.77467 0.77233 0.79410 1.18978 1.18473 1.17693 1.19370 0.90029 0.82547 0.80522 1.90594 1.70350 1.31617 1.58444 1.20892 0.98931 0.88831 1.01527 1.22248 0.91806 0.97866 1.02020 1.20979 0.98870 0.86024 1.02566 0.91081 0.88722 0.89230 0.87666 0.89690 0.91418 0.90866 0.90210 0.87590 0.89716 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.96 10.08 127.77 1.29 3.25 16 2 N -0.48 -21.83 2.99 -650.51 -1.95 -23.77 16 3 C -0.04 -1.45 6.78 41.72 0.28 -1.16 16 4 C -0.14 -6.02 6.05 -19.80 -0.12 -6.14 16 5 C -0.20 -10.91 8.80 23.08 0.20 -10.70 16 6 C -0.03 -1.64 5.74 -19.82 -0.11 -1.75 16 7 C -0.45 -27.31 8.81 23.26 0.21 -27.11 16 8 H 0.06 3.86 7.79 -2.91 -0.02 3.84 16 9 C 0.03 1.52 5.18 85.27 0.44 1.97 16 10 N -0.81 -43.67 10.96 21.85 0.24 -43.43 16 11 Si 0.99 40.65 29.59 68.60 2.03 42.68 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 15 C 0.47 26.97 7.62 86.67 0.66 27.63 16 16 O -0.62 -38.19 15.91 -4.61 -0.07 -38.26 16 17 C -0.06 -2.05 6.78 30.58 0.21 -1.84 16 18 C -0.10 -2.32 7.11 31.49 0.22 -2.09 16 19 C -0.05 -1.22 6.22 30.64 0.19 -1.03 16 20 H 0.07 2.69 6.84 -2.39 -0.02 2.68 16 21 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 22 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.11 5.94 6.21 -2.91 -0.02 5.92 16 24 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 Total: -1.00 -73.30 254.19 4.86 -68.44 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.14 Total: 13.34 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.47 Total: -18.99 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -1.71 Total: -67.21 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.07 Total: -38.26 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -73.30 4.86 -68.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082673416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.355 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds