Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47079 * 17.14319 * 3 2 1 5 5 C 1.46901 * 110.99924 * 73.46053 * 4 3 2 6 6 C 1.47199 * 109.47403 * 293.95259 * 5 4 3 7 7 N 2.98751 * 74.81453 * 55.67512 * 2 1 3 8 8 C 1.46900 * 111.00149 * 197.41476 * 4 3 2 9 9 C 1.52997 * 109.47072 * 72.22266 * 8 4 3 10 10 C 1.50706 * 115.55009 * 54.26913 * 9 8 4 11 11 H 1.07995 * 120.00099 * 215.56248 * 10 9 8 12 12 C 1.37876 * 119.99421 * 35.28969 * 10 9 8 13 13 N 1.31507 * 120.00502 * 356.16573 * 12 10 9 14 14 Si 1.86802 * 119.99669 * 176.16196 * 12 10 9 15 15 H 1.48498 * 109.47206 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46950 * 120.00113 * 14 12 10 17 17 H 1.48496 * 109.47597 * 240.00167 * 14 12 10 18 18 C 1.53007 * 117.50219 * 199.94084 * 9 8 4 19 19 C 1.52999 * 117.50211 * 268.60125 * 9 8 4 20 20 H 1.09002 * 109.47025 * 257.14392 * 3 2 1 21 21 H 1.08998 * 109.47026 * 137.14714 * 3 2 1 22 22 H 1.09004 * 109.46990 * 53.95671 * 5 4 3 23 23 H 1.09004 * 109.47150 * 173.94645 * 5 4 3 24 24 H 1.09006 * 109.46878 * 312.22526 * 8 4 3 25 25 H 1.08995 * 109.47390 * 192.22919 * 8 4 3 26 26 H 0.97000 * 120.00504 * 184.99979 * 13 12 10 27 27 H 1.09000 * 117.49635 * 215.00852 * 18 9 8 28 28 H 1.09001 * 117.49181 * 0.02562 * 18 9 8 29 29 H 1.09008 * 117.49748 * 359.97438 * 19 9 8 30 30 H 1.09001 * 117.50052 * 144.97201 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0982 -1.3226 -0.4082 5 6 2.9057 -1.5337 -1.8492 6 6 1.4656 -1.5860 -2.1494 7 7 0.3534 -1.6258 -2.3811 8 6 4.5075 -1.5004 -0.0338 9 6 4.6142 -1.6751 1.4825 10 6 3.7647 -2.7717 2.0717 11 1 3.3163 -2.6430 3.0458 12 6 3.5554 -3.9368 1.3648 13 7 4.0337 -4.0615 0.1462 14 14 2.5925 -5.3382 2.1382 15 1 2.1656 -4.9497 3.5064 16 1 1.3946 -5.6315 1.3110 17 1 3.4512 -6.5475 2.2119 18 6 5.9748 -1.4102 2.1303 19 6 4.8271 -0.4162 2.3255 20 1 2.9712 0.2295 1.0019 21 1 2.9710 0.7542 -0.6989 22 1 3.3624 -0.7121 -2.4010 23 1 3.3727 -2.4734 -2.1443 24 1 5.0781 -0.6234 -0.3395 25 1 4.9066 -2.3847 -0.5304 26 1 3.8256 -4.8506 -0.3782 27 1 6.2555 -2.0290 2.9825 28 1 6.7938 -1.1109 1.4762 29 1 4.8916 0.5365 1.7998 30 1 4.3525 -0.3809 3.3061 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = 83.680453 kcal Electronic energy + Delta-G solvation = -14770.438310 eV Core-core repulsion = 12374.036425 eV Total energy + Delta-G solvation = -2396.401885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72262 -37.91250 -36.96494 -35.99790 -33.90980 -29.74663 -28.82347 -27.22345 -23.93571 -22.74798 -20.64121 -18.90130 -18.45183 -17.63385 -16.71459 -16.44269 -15.72135 -15.50291 -14.91864 -14.64326 -14.33627 -13.94851 -13.78685 -13.73425 -13.20629 -13.02472 -12.90057 -12.83300 -12.50374 -12.32275 -12.06850 -11.94287 -11.64632 -11.17867 -10.65535 -10.32780 -9.84347 -8.85581 -7.77415 -5.85684 1.40842 1.49416 1.51866 1.53480 1.85275 1.98104 2.11707 2.55201 3.08190 3.29611 3.32328 3.63551 3.93549 4.43430 4.56220 4.61899 4.74772 4.81867 4.84937 5.01154 5.15362 5.20939 5.40238 5.55755 5.77797 5.84211 6.18685 6.44161 6.48611 6.69326 6.72870 6.79170 7.11569 7.74371 9.14039 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.013489 C = 0.010535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.866264 B = 2075.244558 C = 2657.062341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.230 3.770 3 C 0.137 3.863 4 N -0.521 5.521 5 C 0.150 3.850 6 C 0.229 3.771 7 N -0.495 5.495 8 C 0.124 3.876 9 C 0.030 3.970 10 C -0.482 4.482 11 H 0.027 0.973 12 C 0.064 3.936 13 N -0.871 5.871 14 Si 0.909 3.091 15 H -0.286 1.286 16 H -0.302 1.302 17 H -0.281 1.281 18 C -0.202 4.202 19 C -0.202 4.202 20 H 0.131 0.869 21 H 0.124 0.876 22 H 0.126 0.874 23 H 0.131 0.869 24 H 0.043 0.957 25 H 0.113 0.887 26 H 0.254 0.746 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 7.639 -3.959 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.087 4.087 3 C 0.007 3.993 4 N -0.246 5.246 5 C 0.021 3.979 6 C -0.088 4.088 7 N -0.174 5.174 8 C -0.001 4.001 9 C 0.029 3.971 10 C -0.520 4.520 11 H 0.046 0.954 12 C -0.138 4.138 13 N -0.510 5.510 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.229 1.229 17 H -0.207 1.207 18 C -0.241 4.241 19 C -0.239 4.239 20 H 0.148 0.852 21 H 0.141 0.859 22 H 0.143 0.857 23 H 0.149 0.851 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.129 7.042 -4.182 9.172 hybrid contribution 0.123 -0.763 0.632 0.999 sum 4.252 6.278 -3.549 8.372 Atomic orbital electron populations 1.81147 1.15221 1.10048 1.11090 1.30091 0.96208 0.91193 0.91226 1.20135 0.79487 0.93158 1.06544 1.61116 1.24009 1.26748 1.12763 1.19972 0.80795 1.06939 0.90241 1.30140 0.96027 0.91101 0.91555 1.81212 1.14208 1.11310 1.10686 1.21659 0.82810 1.01083 0.94586 1.19086 0.93703 0.92563 0.91760 1.20483 1.30148 0.99507 1.01876 0.95447 1.24911 0.95267 0.98237 0.95359 1.69726 1.44546 1.28097 1.08608 0.86310 0.78892 0.82367 0.78449 1.21198 1.22896 1.20743 1.22977 0.93419 1.04043 1.03660 1.23054 1.04241 0.94868 1.01710 0.85165 0.85866 0.85698 0.85130 0.93915 0.86939 0.93522 0.92328 0.89112 0.87596 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.89 17.88 20.01 0.36 -20.53 16 2 C 0.23 8.11 12.95 89.44 1.16 9.27 16 3 C 0.14 3.57 5.30 84.50 0.45 4.02 16 4 N -0.52 -16.17 3.84 -918.45 -3.53 -19.70 16 5 C 0.15 3.85 5.44 84.50 0.46 4.31 16 6 C 0.23 7.83 12.94 89.43 1.16 8.98 16 7 N -0.49 -20.34 17.79 20.01 0.36 -19.99 16 8 C 0.12 3.89 3.91 86.30 0.34 4.23 16 9 C 0.03 1.13 1.72 -52.92 -0.09 1.04 16 10 C -0.48 -23.20 8.75 25.60 0.22 -22.98 16 11 H 0.03 1.42 7.82 -2.91 -0.02 1.40 16 12 C 0.06 3.12 5.31 84.66 0.45 3.57 16 13 N -0.87 -40.31 10.13 21.45 0.22 -40.10 16 14 Si 0.91 42.46 29.54 68.60 2.03 44.48 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 C -0.20 -7.03 9.96 30.62 0.30 -6.73 16 19 C -0.20 -6.45 8.31 30.62 0.25 -6.20 16 20 H 0.13 3.40 5.35 -2.39 -0.01 3.38 16 21 H 0.12 1.96 7.92 -2.39 -0.02 1.94 16 22 H 0.13 1.88 7.98 -2.39 -0.02 1.86 16 23 H 0.13 3.40 7.86 -2.38 -0.02 3.38 16 24 H 0.04 1.00 8.00 -2.38 -0.02 0.98 16 25 H 0.11 4.03 5.59 -2.39 -0.01 4.02 16 26 H 0.25 11.70 8.32 -92.71 -0.77 10.93 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.11 2.59 7.72 -2.38 -0.02 2.58 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -63.33 266.04 5.28 -58.05 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.15 Total: -1.74 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.70 Total: -0.49 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -2.59 Total: -100.31 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -63.33 5.28 -58.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.733 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds