Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20759 * 120.00255 * 2 1 4 4 C 1.50702 * 119.99907 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.46906 * 316.67131 * 4 2 1 6 6 N 1.46903 * 109.47011 * 196.67772 * 4 2 1 7 7 C 1.50690 * 109.47538 * 76.67317 * 4 2 1 8 8 C 1.37640 * 120.12610 * 16.52624 * 7 4 2 9 9 C 1.38615 * 120.24973 * 180.02562 * 8 7 4 10 10 C 1.38663 * 120.50076 * 359.97438 * 9 8 7 11 11 C 1.37597 * 120.24573 * 0.02714 * 10 9 8 12 12 C 1.40701 * 120.13026 * 196.25131 * 7 4 2 13 13 C 1.41391 * 120.24428 * 359.97438 * 12 7 4 14 14 H 1.08003 * 119.99662 * 29.55026 * 13 12 7 15 15 C 1.39945 * 120.00202 * 209.55977 * 13 12 7 16 16 N 1.30824 * 119.99715 * 11.07954 * 15 13 12 17 17 Si 1.86799 * 120.00117 * 191.08696 * 15 13 12 18 18 H 1.48494 * 109.47025 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47056 * 119.99667 * 17 15 13 20 20 H 1.48491 * 109.47279 * 239.99527 * 17 15 13 21 21 H 1.09000 * 109.47200 * 275.05073 * 1 2 3 22 22 H 1.09005 * 109.47261 * 35.05305 * 1 2 3 23 23 H 1.09009 * 109.47287 * 155.04992 * 1 2 3 24 24 H 1.00900 * 110.99373 * 299.99315 * 6 4 2 25 25 H 1.00897 * 111.00370 * 63.94514 * 6 4 2 26 26 H 1.08000 * 119.88071 * 0.02562 * 8 7 4 27 27 H 1.08002 * 119.74990 * 179.97438 * 9 8 7 28 28 H 1.07998 * 119.87179 * 179.97438 * 10 9 8 29 29 H 1.07995 * 120.12107 * 179.97438 * 11 10 9 30 30 H 0.97004 * 119.99618 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7947 -1.9939 0.7043 6 7 3.6543 -1.0660 0.3970 7 6 2.2281 -1.9033 -1.3833 8 6 1.8846 -1.1246 -2.4650 9 6 1.8535 -1.6724 -3.7380 10 6 2.1676 -3.0082 -3.9372 11 6 2.5137 -3.8054 -2.8704 12 6 2.5543 -3.2586 -1.5743 13 6 2.9148 -4.0666 -0.4714 14 1 2.5123 -3.8542 0.5080 15 6 3.7931 -5.1415 -0.6489 16 7 4.4482 -5.2721 -1.7738 17 14 4.0301 -6.3900 0.7202 18 1 3.1813 -6.0190 1.8807 19 1 3.6420 -7.7382 0.2334 20 1 5.4558 -6.4051 1.1351 21 1 -0.3633 0.0905 1.0237 22 1 -0.3634 0.8413 -0.5902 23 1 -0.3634 -0.9318 -0.4335 24 1 4.1083 -0.4301 -0.2414 25 1 3.7065 -0.7251 1.3452 26 1 1.6385 -0.0829 -2.3216 27 1 1.5825 -1.0541 -4.5810 28 1 2.1397 -3.4246 -4.9333 29 1 2.7576 -4.8456 -3.0279 30 1 5.0567 -6.0174 -1.8970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104488231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = -23.775047 kcal Electronic energy + Delta-G solvation = -14654.923942 eV Core-core repulsion = 12221.569686 eV Total energy + Delta-G solvation = -2433.354256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47447 -37.42837 -33.72338 -33.56981 -30.24885 -29.64792 -28.93092 -25.47520 -24.23549 -21.27886 -20.33426 -18.56911 -17.23841 -16.05759 -15.47084 -15.10330 -14.86139 -14.30546 -14.05086 -13.49599 -13.24791 -12.60730 -12.26867 -12.01430 -11.92007 -11.58113 -11.26299 -11.11826 -11.00456 -10.66281 -10.39970 -9.90860 -9.46009 -9.32961 -9.18371 -7.85826 -7.46503 -7.33133 -6.67782 -4.31316 2.33060 2.76730 2.90351 3.11612 3.16017 3.23729 3.98641 4.58521 4.69095 5.27815 5.42066 5.57481 5.72424 5.82674 5.98579 6.13305 6.20443 6.24693 6.42473 6.68487 7.10995 7.20719 7.34763 7.52808 7.70226 7.78358 7.96092 8.02490 8.06695 8.15780 8.28673 8.63351 8.91953 8.96436 10.27458 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.011193 C = 0.008791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.397196 B = 2500.980032 C = 3184.162617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.332 3.668 3 O -0.481 6.481 4 C 0.118 3.882 5 H 0.103 0.897 6 N -0.808 5.808 7 C -0.189 4.189 8 C -0.090 4.090 9 C -0.241 4.241 10 C -0.103 4.103 11 C -0.157 4.157 12 C 0.135 3.865 13 C -0.435 4.435 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.799 5.799 17 Si 0.909 3.091 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.276 1.276 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.341 0.659 25 H 0.325 0.675 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 2.529 3.140 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.207 3.793 3 O -0.356 6.356 4 C 0.006 3.994 5 H 0.121 0.879 6 N -0.334 5.334 7 C -0.191 4.191 8 C -0.109 4.109 9 C -0.260 4.260 10 C -0.122 4.122 11 C -0.177 4.177 12 C 0.132 3.868 13 C -0.465 4.465 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.425 5.425 17 Si 0.734 3.266 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.154 0.846 25 H 0.137 0.863 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.129 2.130 2.932 5.494 hybrid contribution -0.110 0.419 0.556 0.705 sum -4.239 2.549 3.487 6.052 Atomic orbital electron populations 1.22324 0.95538 1.04893 1.03625 1.26179 0.92658 0.92388 0.68044 1.90325 1.72307 1.35606 1.37407 1.20487 0.88665 0.92179 0.98054 0.87933 1.58881 1.14028 1.54655 1.05870 1.18981 1.15179 0.94396 0.90512 1.20400 1.00626 0.96478 0.93357 1.20289 1.14345 0.95990 0.95397 1.20721 1.00021 0.94094 0.97363 1.21361 1.04076 0.99740 0.92473 1.17315 0.87141 0.89324 0.93015 1.19467 1.22733 1.08712 0.95593 0.90398 1.25850 0.94296 0.97637 0.96378 1.69808 1.19867 1.27876 1.24998 0.86246 0.78807 0.79984 0.81515 1.18556 1.20089 1.20115 0.89436 0.90411 0.89141 0.84590 0.86341 0.90062 0.89595 0.89426 0.86296 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.87 10.19 36.01 0.37 -2.50 16 2 C 0.33 5.85 4.57 -29.03 -0.13 5.72 16 3 O -0.48 -9.49 16.97 6.00 0.10 -9.39 16 4 C 0.12 2.32 2.64 -70.02 -0.18 2.13 16 5 H 0.10 1.95 6.95 -51.93 -0.36 1.59 16 6 N -0.81 -15.86 8.90 -6.65 -0.06 -15.92 16 7 C -0.19 -4.30 5.39 -103.92 -0.56 -4.86 16 8 C -0.09 -1.99 9.08 -39.66 -0.36 -2.35 16 9 C -0.24 -5.37 10.05 -39.29 -0.39 -5.76 16 10 C -0.10 -2.39 10.02 -39.66 -0.40 -2.79 16 11 C -0.16 -3.97 8.65 -38.87 -0.34 -4.31 16 12 C 0.14 3.41 5.53 -106.82 -0.59 2.82 16 13 C -0.44 -10.94 8.38 -37.74 -0.32 -11.26 16 14 H 0.08 1.88 6.63 -52.48 -0.35 1.54 16 15 C 0.07 1.84 5.24 -17.34 -0.09 1.75 16 16 N -0.80 -20.47 10.93 55.55 0.61 -19.87 16 17 Si 0.91 18.59 29.57 -169.99 -5.03 13.56 16 18 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.09 1.25 8.09 -51.92 -0.42 0.83 16 24 H 0.34 6.87 8.60 -39.29 -0.34 6.53 16 25 H 0.33 5.51 9.06 -39.29 -0.36 5.15 16 26 H 0.08 1.69 6.62 -52.49 -0.35 1.35 16 27 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.12 3.11 6.32 -52.49 -0.33 2.78 16 30 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -27.73 260.44 -6.78 -34.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -3.33 Total: 14.57 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.00 Total: -21.40 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.55 Total: -35.78 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.10 Total: -9.39 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.73 -6.78 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104488231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.733 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds