Wall clock time and date at job start Mon Mar 30 2020 02:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 O 1.20756 * 120.00198 * 2 1
4 4 C 1.50704 * 120.00311 * 180.02562 * 2 1 3
5 5 H 1.09001 * 109.47063 * 45.00118 * 4 2 1
6 6 N 1.46900 * 109.47447 * 164.99794 * 4 2 1
7 7 C 1.50694 * 109.47007 * 284.99912 * 4 2 1
8 8 C 1.37637 * 120.13070 * 264.99609 * 7 4 2
9 9 C 1.38616 * 120.25396 * 179.97438 * 8 7 4
10 10 C 1.38657 * 120.49712 * 0.02562 * 9 8 7
11 11 C 1.37603 * 120.25103 * 0.02562 * 10 9 8
12 12 C 1.40706 * 120.12837 * 84.97799 * 7 4 2
13 13 C 1.41388 * 120.24131 * 0.02562 * 12 7 4
14 14 H 1.07999 * 120.00314 * 25.84761 * 13 12 7
15 15 C 1.39942 * 119.99916 * 205.84158 * 13 12 7
16 16 N 1.30821 * 120.00151 * 14.95772 * 15 13 12
17 17 Si 1.86801 * 120.00189 * 194.94863 * 15 13 12
18 18 H 1.48500 * 109.47370 * 0.02562 * 17 15 13
19 19 H 1.48505 * 109.47066 * 120.00023 * 17 15 13
20 20 H 1.48501 * 109.47699 * 240.00215 * 17 15 13
21 21 H 1.09004 * 109.46920 * 269.99817 * 1 2 3
22 22 H 1.08993 * 109.47183 * 30.00101 * 1 2 3
23 23 H 1.09008 * 109.47160 * 150.00238 * 1 2 3
24 24 H 1.00901 * 110.99998 * 59.99759 * 6 4 2
25 25 H 1.00892 * 111.00225 * 183.95405 * 6 4 2
26 26 H 1.07999 * 119.87389 * 359.97438 * 8 7 4
27 27 H 1.07987 * 119.75344 * 180.02562 * 9 8 7
28 28 H 1.08003 * 119.87778 * 179.72288 * 10 9 8
29 29 H 1.08003 * 120.13009 * 179.97438 * 11 10 9
30 30 H 0.97003 * 120.00129 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 8 2.1107 1.0458 0.0000
4 6 2.2605 -1.3051 -0.0006
5 1 1.8129 -1.9828 -0.7276
6 7 3.6639 -1.0601 -0.3590
7 6 2.1933 -1.9245 1.3715
8 6 3.2111 -1.7162 2.2743
9 6 3.1516 -2.2843 3.5373
10 6 2.0689 -3.0682 3.9060
11 6 1.0404 -3.2909 3.0194
12 6 1.0895 -2.7179 1.7349
13 6 0.0381 -2.9390 0.8158
14 1 0.2279 -2.8822 -0.2459
15 6 -1.2486 -3.2316 1.2817
16 7 -1.5548 -3.0175 2.5355
17 14 -2.5293 -3.9278 0.1135
18 1 -1.9362 -4.0761 -1.2398
19 1 -2.9779 -5.2554 0.6049
20 1 -3.6916 -3.0060 0.0467
21 1 -0.3633 0.0000 1.0277
22 1 -0.3633 0.8899 -0.5138
23 1 -0.3634 -0.8901 -0.5138
24 1 4.1015 -0.4341 0.3004
25 1 4.1757 -1.9267 -0.4293
26 1 4.0594 -1.1077 1.9976
27 1 3.9545 -2.1152 4.2393
28 1 2.0350 -3.5097 4.8910
29 1 0.1982 -3.9021 3.3085
30 1 -2.4465 -3.2207 2.8586
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000104488237.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:29:13
Heat of formation + Delta-G solvation = -24.561295 kcal
Electronic energy + Delta-G solvation = -14848.114162 eV
Core-core repulsion = 12414.725812 eV
Total energy + Delta-G solvation = -2433.388350 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.100 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.15115 -37.47065 -34.06882 -33.65115 -30.40261 -29.21400 -28.73241 -25.64404
-24.45093 -21.02418 -20.51633 -18.46716 -17.37526 -16.02053 -15.68137 -15.02100
-14.66571 -14.20598 -13.66354 -13.45313 -13.29708 -12.69853 -12.47882 -11.81723
-11.73038 -11.51849 -11.27744 -11.18014 -11.03112 -10.85796 -10.53845 -9.77359
-9.58347 -9.33237 -9.09485 -8.14246 -7.51791 -7.48576 -6.88822 -4.52630
2.54949 2.71159 2.93927 3.00018 3.03293 3.10568 3.80837 4.49273
4.79542 5.33647 5.63330 5.88042 5.95495 5.96977 6.15407 6.26999
6.34617 6.35667 6.56693 6.78351 6.93302 7.08546 7.17604 7.42257
7.55600 7.72644 7.86046 7.93237 7.96030 8.11047 8.32483 8.45698
8.71850 8.79160 10.04427
Molecular weight = 219.10amu
Principal moments of inertia in cm(-1)
A = 0.023782 B = 0.013519 C = 0.009829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.075355 B = 2070.710421 C = 2848.053628
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.381 3.619
3 O -0.479 6.479
4 C 0.107 3.893
5 H 0.106 0.894
6 N -0.837 5.837
7 C -0.234 4.234
8 C -0.088 4.088
9 C -0.237 4.237
10 C -0.104 4.104
11 C -0.158 4.158
12 C 0.124 3.876
13 C -0.459 4.459
14 H 0.083 0.917
15 C 0.078 3.922
16 N -0.791 5.791
17 Si 0.901 3.099
18 H -0.258 1.258
19 H -0.272 1.272
20 H -0.273 1.273
21 H 0.098 0.902
22 H 0.065 0.935
23 H 0.093 0.907
24 H 0.340 0.660
25 H 0.340 0.660
26 H 0.087 0.913
27 H 0.087 0.913
28 H 0.088 0.912
29 H 0.122 0.878
30 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.478 -0.870 -2.366 2.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.250 4.250
2 C 0.258 3.742
3 O -0.354 6.354
4 C -0.005 4.005
5 H 0.123 0.877
6 N -0.366 5.366
7 C -0.237 4.237
8 C -0.106 4.106
9 C -0.256 4.256
10 C -0.123 4.123
11 C -0.178 4.178
12 C 0.121 3.879
13 C -0.488 4.488
14 H 0.101 0.899
15 C -0.140 4.140
16 N -0.416 5.416
17 Si 0.725 3.275
18 H -0.182 1.182
19 H -0.197 1.197
20 H -0.198 1.198
21 H 0.116 0.884
22 H 0.084 0.916
23 H 0.112 0.888
24 H 0.154 0.846
25 H 0.152 0.848
26 H 0.105 0.895
27 H 0.106 0.894
28 H 0.107 0.893
29 H 0.139 0.861
30 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 0.301 0.003 -2.900 2.915
hybrid contribution -0.543 -0.915 0.743 1.298
sum -0.243 -0.912 -2.157 2.355
Atomic orbital electron populations
1.22268 0.94131 1.03461 1.05147 1.24630 0.91976 0.89505 0.68070
1.90275 1.72390 1.35232 1.37533 1.20444 0.89379 0.95120 0.95538
0.87651 1.58935 1.02882 1.18584 1.56201 1.19990 1.00371 1.07218
0.96136 1.20318 0.97221 0.99036 0.94038 1.20348 1.00276 1.08117
0.96875 1.20754 0.94770 0.98851 0.97928 1.21408 0.98451 1.02884
0.95020 1.17394 0.90517 0.87573 0.92410 1.19574 0.92473 1.42298
0.94497 0.89930 1.25864 0.99733 0.92926 0.95485 1.69803 1.21508
1.34660 1.15637 0.86361 0.80201 0.79476 0.81447 1.18176 1.19712
1.19809 0.88355 0.91635 0.88795 0.84568 0.84754 0.89476 0.89438
0.89343 0.86056 0.90757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.59 9.11 36.00 0.33 -3.26 16
2 C 0.38 7.87 6.53 -29.04 -0.19 7.68 16
3 O -0.48 -10.83 16.97 6.00 0.10 -10.73 16
4 C 0.11 2.14 2.91 -70.02 -0.20 1.94 16
5 H 0.11 2.07 6.49 -51.93 -0.34 1.73 16
6 N -0.84 -15.13 8.53 -6.65 -0.06 -15.19 16
7 C -0.23 -5.19 5.07 -103.91 -0.53 -5.71 16
8 C -0.09 -1.89 9.26 -39.66 -0.37 -2.26 16
9 C -0.24 -5.16 10.05 -39.29 -0.39 -5.55 16
10 C -0.10 -2.36 10.02 -39.66 -0.40 -2.75 16
11 C -0.16 -3.85 8.68 -38.87 -0.34 -4.18 16
12 C 0.12 2.96 5.57 -106.82 -0.59 2.37 16
13 C -0.46 -10.51 6.21 -37.75 -0.23 -10.74 16
14 H 0.08 1.79 5.76 -52.49 -0.30 1.49 16
15 C 0.08 1.75 5.19 -17.34 -0.09 1.66 16
16 N -0.79 -18.60 10.88 55.55 0.60 -18.00 16
17 Si 0.90 16.95 29.58 -169.99 -5.03 11.92 16
18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16
19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16
20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16
21 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16
22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
23 H 0.09 1.69 6.33 -51.92 -0.33 1.36 16
24 H 0.34 6.22 6.84 -39.29 -0.27 5.95 16
25 H 0.34 5.53 9.06 -39.30 -0.36 5.17 16
26 H 0.09 1.71 6.28 -52.49 -0.33 1.38 16
27 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16
28 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16
29 H 0.12 3.04 6.16 -52.48 -0.32 2.71 16
30 H 0.28 6.07 8.30 -40.82 -0.34 5.74 16
LS Contribution 253.52 15.07 3.82 3.82
Total: -1.00 -25.80 253.52 -6.64 -32.44
By element:
Atomic # 1 Polarization: 19.62 SS G_CDS: -3.07 Total: 16.55 kcal
Atomic # 6 Polarization: -17.81 SS G_CDS: -3.01 Total: -20.82 kcal
Atomic # 7 Polarization: -33.73 SS G_CDS: 0.55 Total: -33.18 kcal
Atomic # 8 Polarization: -10.83 SS G_CDS: 0.10 Total: -10.73 kcal
Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal
Total LS contribution 3.82 Total: 3.82 kcal
Total: -25.80 -6.64 -32.44 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104488237.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.880 kcal
(2) G-P(sol) polarization free energy of solvation -25.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.923 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds