Wall clock time and date at job start Mon Mar 30 2020 02:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 O 1.20756 * 120.00198 * 2 1
4 4 C 1.50704 * 120.00311 * 180.02562 * 2 1 3
5 5 H 1.09001 * 109.47063 * 45.00118 * 4 2 1
6 6 N 1.46900 * 109.47447 * 164.99794 * 4 2 1
7 7 C 1.50694 * 109.47007 * 284.99912 * 4 2 1
8 8 C 1.37637 * 120.13070 * 264.99609 * 7 4 2
9 9 C 1.38616 * 120.25396 * 179.97438 * 8 7 4
10 10 C 1.38657 * 120.49712 * 0.02562 * 9 8 7
11 11 C 1.37603 * 120.25103 * 0.02562 * 10 9 8
12 12 C 1.40706 * 120.12837 * 84.97799 * 7 4 2
13 13 C 1.41388 * 120.24131 * 0.02562 * 12 7 4
14 14 H 1.07999 * 120.00314 * 25.84761 * 13 12 7
15 15 C 1.39942 * 119.99916 * 205.84158 * 13 12 7
16 16 N 1.30821 * 120.00151 * 14.95772 * 15 13 12
17 17 Si 1.86801 * 120.00189 * 194.94863 * 15 13 12
18 18 H 1.48500 * 109.47370 * 0.02562 * 17 15 13
19 19 H 1.48505 * 109.47066 * 120.00023 * 17 15 13
20 20 H 1.48501 * 109.47699 * 240.00215 * 17 15 13
21 21 H 1.09004 * 109.46920 * 269.99817 * 1 2 3
22 22 H 1.08993 * 109.47183 * 30.00101 * 1 2 3
23 23 H 1.09008 * 109.47160 * 150.00238 * 1 2 3
24 24 H 1.00901 * 110.99998 * 59.99759 * 6 4 2
25 25 H 1.00892 * 111.00225 * 183.95405 * 6 4 2
26 26 H 1.07999 * 119.87389 * 359.97438 * 8 7 4
27 27 H 1.07987 * 119.75344 * 180.02562 * 9 8 7
28 28 H 1.08003 * 119.87778 * 179.72288 * 10 9 8
29 29 H 1.08003 * 120.13009 * 179.97438 * 11 10 9
30 30 H 0.97003 * 120.00129 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 8 2.1107 1.0458 0.0000
4 6 2.2605 -1.3051 -0.0006
5 1 1.8129 -1.9828 -0.7276
6 7 3.6639 -1.0601 -0.3590
7 6 2.1933 -1.9245 1.3715
8 6 3.2111 -1.7162 2.2743
9 6 3.1516 -2.2843 3.5373
10 6 2.0689 -3.0682 3.9060
11 6 1.0404 -3.2909 3.0194
12 6 1.0895 -2.7179 1.7349
13 6 0.0381 -2.9390 0.8158
14 1 0.2279 -2.8822 -0.2459
15 6 -1.2486 -3.2316 1.2817
16 7 -1.5548 -3.0175 2.5355
17 14 -2.5293 -3.9278 0.1135
18 1 -1.9362 -4.0761 -1.2398
19 1 -2.9779 -5.2554 0.6049
20 1 -3.6916 -3.0060 0.0467
21 1 -0.3633 0.0000 1.0277
22 1 -0.3633 0.8899 -0.5138
23 1 -0.3634 -0.8901 -0.5138
24 1 4.1015 -0.4341 0.3004
25 1 4.1757 -1.9267 -0.4293
26 1 4.0594 -1.1077 1.9976
27 1 3.9545 -2.1152 4.2393
28 1 2.0350 -3.5097 4.8910
29 1 0.1982 -3.9021 3.3085
30 1 -2.4465 -3.2207 2.8586
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000104488237.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:29:13
Heat of formation + Delta-G solvation = -39.723432 kcal
Electronic energy + Delta-G solvation = -14848.771642 eV
Core-core repulsion = 12414.725812 eV
Total energy + Delta-G solvation = -2434.045830 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.100 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.81332 -39.18495 -35.72659 -35.31485 -32.05812 -30.84401 -30.41196 -27.34495
-26.07292 -22.76384 -22.21761 -20.11661 -19.09023 -17.63291 -17.33851 -16.62167
-16.27367 -15.85921 -15.30632 -15.10155 -14.92955 -14.34513 -14.12422 -13.48680
-13.30445 -13.10286 -12.88302 -12.71554 -12.67645 -12.50725 -12.07359 -11.48498
-11.26980 -11.02116 -10.73846 -9.67730 -9.28078 -9.21806 -8.58028 -6.28668
0.84861 1.03345 1.24620 1.46892 1.55102 1.58809 2.23939 2.78803
3.25200 3.67349 4.03005 4.31110 4.31737 4.37903 4.53399 4.62679
4.77356 4.83745 4.90403 5.21699 5.26712 5.33131 5.45630 5.69560
5.94408 6.02961 6.16803 6.19305 6.35110 6.57526 6.67378 6.72790
6.97511 7.04435 8.37684
Molecular weight = 219.10amu
Principal moments of inertia in cm(-1)
A = 0.023782 B = 0.013519 C = 0.009829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.075355 B = 2070.710421 C = 2848.053628
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.379 3.621
3 O -0.500 6.500
4 C 0.112 3.888
5 H 0.111 0.889
6 N -0.831 5.831
7 C -0.238 4.238
8 C -0.095 4.095
9 C -0.245 4.245
10 C -0.112 4.112
11 C -0.187 4.187
12 C 0.101 3.899
13 C -0.470 4.470
14 H 0.092 0.908
15 C 0.045 3.955
16 N -0.822 5.822
17 Si 0.964 3.036
18 H -0.250 1.250
19 H -0.275 1.275
20 H -0.269 1.269
21 H 0.081 0.919
22 H 0.087 0.913
23 H 0.100 0.900
24 H 0.341 0.659
25 H 0.351 0.649
26 H 0.108 0.892
27 H 0.111 0.889
28 H 0.105 0.895
29 H 0.105 0.895
30 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.545 -0.819 -3.334 3.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.258 3.742
3 O -0.377 6.377
4 C -0.001 4.001
5 H 0.128 0.872
6 N -0.361 5.361
7 C -0.241 4.241
8 C -0.113 4.113
9 C -0.264 4.264
10 C -0.130 4.130
11 C -0.207 4.207
12 C 0.098 3.902
13 C -0.499 4.499
14 H 0.110 0.890
15 C -0.171 4.171
16 N -0.448 5.448
17 Si 0.786 3.214
18 H -0.173 1.173
19 H -0.200 1.200
20 H -0.194 1.194
21 H 0.100 0.900
22 H 0.106 0.894
23 H 0.119 0.881
24 H 0.155 0.845
25 H 0.165 0.835
26 H 0.126 0.874
27 H 0.129 0.871
28 H 0.123 0.877
29 H 0.123 0.877
30 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 0.384 0.047 -3.869 3.888
hybrid contribution -0.511 -0.919 1.091 1.515
sum -0.127 -0.872 -2.778 2.915
Atomic orbital electron populations
1.22208 0.92795 1.04936 1.04374 1.24942 0.92858 0.89329 0.67121
1.90266 1.72946 1.35877 1.38603 1.20387 0.90453 0.94720 0.94515
0.87178 1.58920 1.02106 1.19245 1.55816 1.20230 0.99926 1.06716
0.97230 1.20632 0.97740 0.98962 0.93986 1.20667 1.00590 1.07611
0.97521 1.21001 0.94609 0.98903 0.98496 1.21425 0.98914 1.04152
0.96171 1.17706 0.91612 0.88215 0.92655 1.19772 0.92712 1.42636
0.94768 0.89040 1.26572 1.01305 0.92596 0.96648 1.69870 1.22265
1.35364 1.17294 0.85397 0.77820 0.78432 0.79731 1.17314 1.20009
1.19357 0.90031 0.89435 0.88128 0.84544 0.83503 0.87441 0.87097
0.87663 0.87681 0.90305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -6.67 9.11 71.23 0.65 -6.02 16
2 C 0.38 15.12 6.53 29.10 0.19 15.31 16
3 O -0.50 -21.91 16.97 -1.44 -0.02 -21.94 16
4 C 0.11 4.30 2.91 43.42 0.13 4.43 16
5 H 0.11 4.14 6.49 -2.39 -0.02 4.12 16
6 N -0.83 -28.41 8.53 -174.95 -1.49 -29.91 16
7 C -0.24 -10.32 5.07 -19.41 -0.10 -10.42 16
8 C -0.09 -3.96 9.26 22.22 0.21 -3.76 16
9 C -0.24 -10.32 10.05 22.46 0.23 -10.09 16
10 C -0.11 -5.00 10.02 22.22 0.22 -4.78 16
11 C -0.19 -9.19 8.68 22.73 0.20 -8.99 16
12 C 0.10 4.82 5.57 -21.29 -0.12 4.70 16
13 C -0.47 -21.26 6.21 23.46 0.15 -21.11 16
14 H 0.09 3.86 5.76 -2.91 -0.02 3.84 16
15 C 0.04 1.96 5.19 85.26 0.44 2.41 16
16 N -0.82 -38.93 10.88 21.83 0.24 -38.69 16
17 Si 0.96 33.92 29.58 68.60 2.03 35.95 16
18 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16
19 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16
20 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16
21 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16
22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
23 H 0.10 3.45 6.33 -2.38 -0.02 3.43 16
24 H 0.34 11.76 6.84 -89.69 -0.61 11.15 16
25 H 0.35 10.66 9.06 -89.70 -0.81 9.85 16
26 H 0.11 3.98 6.28 -2.91 -0.02 3.96 16
27 H 0.11 4.08 8.06 -2.92 -0.02 4.05 16
28 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16
29 H 0.11 5.41 6.16 -2.91 -0.02 5.39 16
30 H 0.29 12.43 8.30 -92.71 -0.77 11.66 16
Total: -1.00 -53.26 253.52 2.69 -50.57
By element:
Atomic # 1 Polarization: 42.57 SS G_CDS: -0.24 Total: 42.33 kcal
Atomic # 6 Polarization: -40.51 SS G_CDS: 2.19 Total: -38.32 kcal
Atomic # 7 Polarization: -67.34 SS G_CDS: -1.26 Total: -68.60 kcal
Atomic # 8 Polarization: -21.91 SS G_CDS: -0.02 Total: -21.94 kcal
Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal
Total: -53.26 2.69 -50.57 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104488237.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.846 kcal
(2) G-P(sol) polarization free energy of solvation -53.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds