Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20756 * 120.00198 * 2 1 4 4 C 1.50704 * 120.00311 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47063 * 45.00118 * 4 2 1 6 6 N 1.46900 * 109.47447 * 164.99794 * 4 2 1 7 7 C 1.50694 * 109.47007 * 284.99912 * 4 2 1 8 8 C 1.37637 * 120.13070 * 264.99609 * 7 4 2 9 9 C 1.38616 * 120.25396 * 179.97438 * 8 7 4 10 10 C 1.38657 * 120.49712 * 0.02562 * 9 8 7 11 11 C 1.37603 * 120.25103 * 0.02562 * 10 9 8 12 12 C 1.40706 * 120.12837 * 84.97799 * 7 4 2 13 13 C 1.41388 * 120.24131 * 0.02562 * 12 7 4 14 14 H 1.07999 * 120.00314 * 25.84761 * 13 12 7 15 15 C 1.39942 * 119.99916 * 205.84158 * 13 12 7 16 16 N 1.30821 * 120.00151 * 14.95772 * 15 13 12 17 17 Si 1.86801 * 120.00189 * 194.94863 * 15 13 12 18 18 H 1.48500 * 109.47370 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47066 * 120.00023 * 17 15 13 20 20 H 1.48501 * 109.47699 * 240.00215 * 17 15 13 21 21 H 1.09004 * 109.46920 * 269.99817 * 1 2 3 22 22 H 1.08993 * 109.47183 * 30.00101 * 1 2 3 23 23 H 1.09008 * 109.47160 * 150.00238 * 1 2 3 24 24 H 1.00901 * 110.99998 * 59.99759 * 6 4 2 25 25 H 1.00892 * 111.00225 * 183.95405 * 6 4 2 26 26 H 1.07999 * 119.87389 * 359.97438 * 8 7 4 27 27 H 1.07987 * 119.75344 * 180.02562 * 9 8 7 28 28 H 1.08003 * 119.87778 * 179.72288 * 10 9 8 29 29 H 1.08003 * 120.13009 * 179.97438 * 11 10 9 30 30 H 0.97003 * 120.00129 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8129 -1.9828 -0.7276 6 7 3.6639 -1.0601 -0.3590 7 6 2.1933 -1.9245 1.3715 8 6 3.2111 -1.7162 2.2743 9 6 3.1516 -2.2843 3.5373 10 6 2.0689 -3.0682 3.9060 11 6 1.0404 -3.2909 3.0194 12 6 1.0895 -2.7179 1.7349 13 6 0.0381 -2.9390 0.8158 14 1 0.2279 -2.8822 -0.2459 15 6 -1.2486 -3.2316 1.2817 16 7 -1.5548 -3.0175 2.5355 17 14 -2.5293 -3.9278 0.1135 18 1 -1.9362 -4.0761 -1.2398 19 1 -2.9779 -5.2554 0.6049 20 1 -3.6916 -3.0060 0.0467 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3634 -0.8901 -0.5138 24 1 4.1015 -0.4341 0.3004 25 1 4.1757 -1.9267 -0.4293 26 1 4.0594 -1.1077 1.9976 27 1 3.9545 -2.1152 4.2393 28 1 2.0350 -3.5097 4.8910 29 1 0.1982 -3.9021 3.3085 30 1 -2.4465 -3.2207 2.8586 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104488237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = -39.723432 kcal Electronic energy + Delta-G solvation = -14848.771642 eV Core-core repulsion = 12414.725812 eV Total energy + Delta-G solvation = -2434.045830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81332 -39.18495 -35.72659 -35.31485 -32.05812 -30.84401 -30.41196 -27.34495 -26.07292 -22.76384 -22.21761 -20.11661 -19.09023 -17.63291 -17.33851 -16.62167 -16.27367 -15.85921 -15.30632 -15.10155 -14.92955 -14.34513 -14.12422 -13.48680 -13.30445 -13.10286 -12.88302 -12.71554 -12.67645 -12.50725 -12.07359 -11.48498 -11.26980 -11.02116 -10.73846 -9.67730 -9.28078 -9.21806 -8.58028 -6.28668 0.84861 1.03345 1.24620 1.46892 1.55102 1.58809 2.23939 2.78803 3.25200 3.67349 4.03005 4.31110 4.31737 4.37903 4.53399 4.62679 4.77356 4.83745 4.90403 5.21699 5.26712 5.33131 5.45630 5.69560 5.94408 6.02961 6.16803 6.19305 6.35110 6.57526 6.67378 6.72790 6.97511 7.04435 8.37684 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.013519 C = 0.009829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.075355 B = 2070.710421 C = 2848.053628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.379 3.621 3 O -0.500 6.500 4 C 0.112 3.888 5 H 0.111 0.889 6 N -0.831 5.831 7 C -0.238 4.238 8 C -0.095 4.095 9 C -0.245 4.245 10 C -0.112 4.112 11 C -0.187 4.187 12 C 0.101 3.899 13 C -0.470 4.470 14 H 0.092 0.908 15 C 0.045 3.955 16 N -0.822 5.822 17 Si 0.964 3.036 18 H -0.250 1.250 19 H -0.275 1.275 20 H -0.269 1.269 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.341 0.659 25 H 0.351 0.649 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -0.819 -3.334 3.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.258 3.742 3 O -0.377 6.377 4 C -0.001 4.001 5 H 0.128 0.872 6 N -0.361 5.361 7 C -0.241 4.241 8 C -0.113 4.113 9 C -0.264 4.264 10 C -0.130 4.130 11 C -0.207 4.207 12 C 0.098 3.902 13 C -0.499 4.499 14 H 0.110 0.890 15 C -0.171 4.171 16 N -0.448 5.448 17 Si 0.786 3.214 18 H -0.173 1.173 19 H -0.200 1.200 20 H -0.194 1.194 21 H 0.100 0.900 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.155 0.845 25 H 0.165 0.835 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.384 0.047 -3.869 3.888 hybrid contribution -0.511 -0.919 1.091 1.515 sum -0.127 -0.872 -2.778 2.915 Atomic orbital electron populations 1.22208 0.92795 1.04936 1.04374 1.24942 0.92858 0.89329 0.67121 1.90266 1.72946 1.35877 1.38603 1.20387 0.90453 0.94720 0.94515 0.87178 1.58920 1.02106 1.19245 1.55816 1.20230 0.99926 1.06716 0.97230 1.20632 0.97740 0.98962 0.93986 1.20667 1.00590 1.07611 0.97521 1.21001 0.94609 0.98903 0.98496 1.21425 0.98914 1.04152 0.96171 1.17706 0.91612 0.88215 0.92655 1.19772 0.92712 1.42636 0.94768 0.89040 1.26572 1.01305 0.92596 0.96648 1.69870 1.22265 1.35364 1.17294 0.85397 0.77820 0.78432 0.79731 1.17314 1.20009 1.19357 0.90031 0.89435 0.88128 0.84544 0.83503 0.87441 0.87097 0.87663 0.87681 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.67 9.11 71.23 0.65 -6.02 16 2 C 0.38 15.12 6.53 29.10 0.19 15.31 16 3 O -0.50 -21.91 16.97 -1.44 -0.02 -21.94 16 4 C 0.11 4.30 2.91 43.42 0.13 4.43 16 5 H 0.11 4.14 6.49 -2.39 -0.02 4.12 16 6 N -0.83 -28.41 8.53 -174.95 -1.49 -29.91 16 7 C -0.24 -10.32 5.07 -19.41 -0.10 -10.42 16 8 C -0.09 -3.96 9.26 22.22 0.21 -3.76 16 9 C -0.24 -10.32 10.05 22.46 0.23 -10.09 16 10 C -0.11 -5.00 10.02 22.22 0.22 -4.78 16 11 C -0.19 -9.19 8.68 22.73 0.20 -8.99 16 12 C 0.10 4.82 5.57 -21.29 -0.12 4.70 16 13 C -0.47 -21.26 6.21 23.46 0.15 -21.11 16 14 H 0.09 3.86 5.76 -2.91 -0.02 3.84 16 15 C 0.04 1.96 5.19 85.26 0.44 2.41 16 16 N -0.82 -38.93 10.88 21.83 0.24 -38.69 16 17 Si 0.96 33.92 29.58 68.60 2.03 35.95 16 18 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 21 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 23 H 0.10 3.45 6.33 -2.38 -0.02 3.43 16 24 H 0.34 11.76 6.84 -89.69 -0.61 11.15 16 25 H 0.35 10.66 9.06 -89.70 -0.81 9.85 16 26 H 0.11 3.98 6.28 -2.91 -0.02 3.96 16 27 H 0.11 4.08 8.06 -2.92 -0.02 4.05 16 28 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.11 5.41 6.16 -2.91 -0.02 5.39 16 30 H 0.29 12.43 8.30 -92.71 -0.77 11.66 16 Total: -1.00 -53.26 253.52 2.69 -50.57 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.24 Total: 42.33 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 2.19 Total: -38.32 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.26 Total: -68.60 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.02 Total: -21.94 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Total: -53.26 2.69 -50.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104488237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.846 kcal (2) G-P(sol) polarization free energy of solvation -53.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds