Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20764 * 120.00317 * 2 1 4 4 C 1.50701 * 119.99945 * 180.27748 * 2 1 3 5 5 H 1.09002 * 109.47373 * 44.72417 * 4 2 1 6 6 N 1.46900 * 109.47073 * 164.72483 * 4 2 1 7 7 C 1.50704 * 109.47297 * 284.72237 * 4 2 1 8 8 C 1.38659 * 119.87395 * 279.73231 * 7 4 2 9 9 C 1.38611 * 120.49713 * 179.71862 * 8 7 4 10 10 C 1.37637 * 120.24735 * 0.55030 * 9 8 7 11 11 C 1.40692 * 119.74916 * 359.72700 * 10 9 8 12 12 C 1.41392 * 120.24964 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00334 * 155.20686 * 12 11 10 14 14 C 1.39948 * 120.00002 * 335.20714 * 12 11 10 15 15 N 1.30828 * 119.99846 * 342.28566 * 14 12 11 16 16 Si 1.86796 * 120.00311 * 162.28837 * 14 12 11 17 17 H 1.48503 * 109.46950 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47423 * 120.00131 * 16 14 12 19 19 H 1.48505 * 109.47011 * 240.00133 * 16 14 12 20 20 C 1.37592 * 119.87516 * 99.99559 * 7 4 2 21 21 H 1.08998 * 109.47154 * 269.71964 * 1 2 3 22 22 H 1.08996 * 109.46909 * 29.72309 * 1 2 3 23 23 H 1.09001 * 109.46752 * 149.72583 * 1 2 3 24 24 H 1.00902 * 111.00293 * 59.99915 * 6 4 2 25 25 H 1.00902 * 111.00434 * 183.95332 * 6 4 2 26 26 H 1.07996 * 119.74980 * 359.97438 * 8 7 4 27 27 H 1.07996 * 119.87633 * 180.25422 * 9 8 7 28 28 H 1.08008 * 120.12828 * 179.70423 * 10 9 8 29 29 H 0.96993 * 119.99748 * 179.97438 * 15 14 12 30 30 H 1.08001 * 120.12769 * 0.03372 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0063 5 1 1.8098 -1.9814 -0.7328 6 7 3.6623 -1.0594 -0.3700 7 6 2.1989 -1.9274 1.3649 8 6 3.0526 -1.4839 2.3635 9 6 3.0031 -2.0431 3.6308 10 6 2.1116 -3.0544 3.9081 11 6 1.2445 -3.5163 2.9010 12 6 0.3241 -4.5542 3.1744 13 1 -0.5783 -4.6442 2.5879 14 6 0.5824 -5.4650 4.2051 15 7 1.7945 -5.5864 4.6822 16 14 -0.8034 -6.5073 4.8996 17 1 -2.0689 -6.1820 4.1939 18 1 -0.4850 -7.9451 4.7085 19 1 -0.9582 -6.2230 6.3489 20 6 1.2996 -2.9371 1.6196 21 1 -0.3633 -0.0050 1.0276 22 1 -0.3633 0.8924 -0.5095 23 1 -0.3633 -0.8875 -0.5181 24 1 4.1027 -0.4347 0.2888 25 1 4.1740 -1.9259 -0.4442 26 1 3.7585 -0.6941 2.1534 27 1 3.6699 -1.6872 4.4023 28 1 2.0779 -3.4920 4.8950 29 1 1.9734 -6.2174 5.3968 30 1 0.6389 -3.2842 0.8389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104488245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -28.819181 kcal Electronic energy + Delta-G solvation = -14299.250370 eV Core-core repulsion = 11865.677384 eV Total energy + Delta-G solvation = -2433.572986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38119 -37.56811 -34.63804 -33.10600 -30.39575 -29.81401 -28.87570 -25.33858 -24.83872 -20.90888 -20.78938 -18.97125 -17.12698 -16.23844 -15.58765 -15.03331 -14.90378 -14.59527 -13.94933 -13.62160 -13.41164 -12.87563 -12.38687 -12.07230 -11.86779 -11.75967 -11.55215 -11.27438 -11.16300 -10.73862 -10.53659 -9.98507 -9.57139 -9.44826 -9.19727 -8.38442 -7.61634 -7.41130 -6.86607 -4.47840 2.30627 2.66768 2.83991 3.01564 3.06209 3.11139 3.85228 4.35551 4.51977 5.19258 5.35417 5.52257 5.60843 5.65474 5.78715 5.82943 6.21843 6.23269 6.30774 6.78551 6.93340 7.06794 7.19136 7.36220 7.44768 7.67904 7.80432 7.88016 7.91995 7.97013 8.13941 8.50959 8.77143 8.83605 10.08351 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043423 B = 0.007549 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.671707 B = 3708.020965 C = 4035.415054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.374 3.626 3 O -0.462 6.462 4 C 0.088 3.912 5 H 0.104 0.896 6 N -0.832 5.832 7 C -0.100 4.100 8 C -0.234 4.234 9 C -0.103 4.103 10 C -0.159 4.159 11 C 0.110 3.890 12 C -0.462 4.462 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.908 3.092 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.208 4.208 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.345 0.655 25 H 0.345 0.655 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.281 0.719 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 2.555 -3.557 4.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.249 3.751 3 O -0.335 6.335 4 C -0.024 4.024 5 H 0.121 0.879 6 N -0.361 5.361 7 C -0.102 4.102 8 C -0.254 4.254 9 C -0.121 4.121 10 C -0.178 4.178 11 C 0.107 3.893 12 C -0.492 4.492 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.732 3.268 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.229 4.229 21 H 0.116 0.884 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.160 0.840 25 H 0.157 0.843 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.952 3.296 -4.085 5.600 hybrid contribution -0.325 -1.211 1.421 1.895 sum -2.276 2.085 -2.664 4.077 Atomic orbital electron populations 1.22222 0.94528 1.04025 1.04925 1.24541 0.91698 0.89738 0.69104 1.90323 1.72115 1.34913 1.36162 1.20788 0.91007 0.95286 0.95349 0.87858 1.58947 1.02176 1.19096 1.55915 1.19671 0.98897 0.98152 0.93436 1.20123 1.05066 1.05523 0.94713 1.20652 0.98761 0.97324 0.95383 1.21384 0.99130 0.97430 0.99891 1.17601 0.91013 0.90695 0.89968 1.19608 1.05920 1.09595 1.14061 0.90265 1.25926 0.95997 0.97003 0.95315 1.69823 1.20008 1.30166 1.21738 0.86271 0.81859 0.79275 0.79410 1.18327 1.19940 1.19669 1.20831 1.03106 1.02121 0.96809 0.88405 0.90242 0.89733 0.84028 0.84256 0.89613 0.89293 0.86394 0.90817 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 10.24 36.00 0.37 -2.36 16 2 C 0.37 6.43 6.53 -29.04 -0.19 6.24 16 3 O -0.46 -9.12 16.97 6.00 0.10 -9.02 16 4 C 0.09 1.54 3.31 -70.01 -0.23 1.30 16 5 H 0.10 1.64 7.99 -51.93 -0.42 1.22 16 6 N -0.83 -13.83 8.76 -6.65 -0.06 -13.89 16 7 C -0.10 -2.05 4.91 -104.70 -0.51 -2.57 16 8 C -0.23 -5.07 9.30 -39.29 -0.37 -5.43 16 9 C -0.10 -2.36 10.02 -39.66 -0.40 -2.75 16 10 C -0.16 -3.99 8.70 -38.87 -0.34 -4.33 16 11 C 0.11 2.77 5.57 -106.83 -0.60 2.18 16 12 C -0.46 -11.69 9.05 -37.74 -0.34 -12.04 16 13 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 14 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 15 N -0.79 -19.85 10.97 55.55 0.61 -19.24 16 16 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 20 C -0.21 -4.70 9.41 -38.87 -0.37 -5.06 16 21 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 24 H 0.35 5.93 6.95 -39.29 -0.27 5.65 16 25 H 0.34 5.30 9.06 -39.29 -0.36 4.94 16 26 H 0.09 1.73 6.63 -52.49 -0.35 1.38 16 27 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.12 3.07 6.18 -52.48 -0.32 2.75 16 29 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 30 H 0.10 1.98 8.03 -52.49 -0.42 1.56 16 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -27.48 263.29 -6.85 -34.32 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -3.38 Total: 13.99 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -3.06 Total: -23.07 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.55 Total: -33.13 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.10 Total: -9.02 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.48 -6.85 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104488245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.502 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds