Wall clock time and date at job start Mon Mar 30 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39962 * 126.45081 * 2 1 4 4 C 1.50706 * 126.07178 * 0.02562 * 3 2 1 5 5 C 1.35361 * 107.85653 * 180.15896 * 3 2 1 6 6 C 1.50707 * 125.57536 * 179.84555 * 5 3 2 7 7 H 1.09005 * 109.46877 * 324.71507 * 6 5 3 8 8 N 1.46900 * 109.47130 * 204.71843 * 6 5 3 9 9 C 1.50696 * 109.47007 * 84.71230 * 6 5 3 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 N 1.35762 * 108.85301 * 359.57565 * 5 3 2 18 18 H 0.96992 * 125.68219 * 180.22377 * 17 5 3 19 19 C 1.37577 * 108.63752 * 0.26981 * 17 5 3 20 20 C 1.43193 * 126.22222 * 180.02562 * 19 17 5 21 21 N 3.56080 * 90.87272 * 179.68480 * 2 1 3 22 22 H 1.08994 * 109.47584 * 270.27883 * 1 2 3 23 23 H 1.09005 * 109.46914 * 30.28172 * 1 2 3 24 24 H 1.09004 * 109.46934 * 150.27254 * 1 2 3 25 25 H 1.08994 * 109.46654 * 270.16032 * 4 3 2 26 26 H 1.08997 * 109.46805 * 30.15892 * 4 3 2 27 27 H 1.08991 * 109.46887 * 150.16233 * 4 3 2 28 28 H 1.00899 * 110.99700 * 299.99445 * 8 6 5 29 29 H 1.00893 * 110.99909 * 63.95117 * 8 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3386 1.1258 0.0000 4 6 1.8859 2.5633 0.0005 5 6 3.6215 0.6942 -0.0036 6 6 4.8434 1.5764 -0.0082 7 1 4.6450 2.4687 -0.6020 8 7 5.9750 0.8425 -0.5901 9 6 5.1783 1.9779 1.4052 10 1 4.5678 1.6288 2.2248 11 6 6.2643 2.7909 1.6519 12 7 6.5569 3.1409 2.8854 13 14 7.3197 3.3953 0.2341 14 1 8.4166 2.4257 -0.0149 15 1 6.4837 3.5212 -0.9868 16 1 7.8979 4.7195 0.5769 17 7 3.6277 -0.6634 0.0037 18 1 4.4181 -1.2256 0.0062 19 6 2.3260 -1.1090 0.0059 20 6 1.8996 -2.4759 0.0137 21 7 1.5612 -3.5603 0.0196 22 1 -0.3634 0.0050 1.0276 23 1 -0.3633 0.8875 -0.5182 24 1 -0.3633 -0.8925 -0.5096 25 1 1.7737 2.9092 -1.0270 26 1 0.9295 2.6428 0.5172 27 1 2.6273 3.1774 0.5117 28 1 6.1789 0.0104 -0.0571 29 1 5.8010 0.6182 -1.5583 30 1 7.3211 3.7126 3.0589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104517032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:25 Heat of formation + Delta-G solvation = 59.940396 kcal Electronic energy + Delta-G solvation = -14374.237574 eV Core-core repulsion = 11976.806244 eV Total energy + Delta-G solvation = -2397.431331 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06418 -36.36105 -34.89862 -33.03145 -31.90557 -30.54629 -26.96619 -26.54664 -25.97564 -22.87361 -19.61439 -18.67127 -18.33691 -17.05140 -15.60242 -14.97198 -14.63874 -14.33473 -13.73992 -13.15264 -13.05458 -12.82596 -12.58250 -12.52012 -12.45634 -12.07957 -12.05813 -11.82727 -11.45900 -11.07922 -10.77779 -10.52257 -9.97204 -9.44611 -8.66894 -8.21077 -8.00597 -7.43474 -6.13289 -4.26155 1.70798 2.55665 3.12796 3.48195 3.50238 3.54626 3.64044 3.67725 4.37074 4.52401 5.07321 5.31212 5.38632 5.55983 5.67490 5.83408 5.86514 6.01542 6.16507 6.27066 6.38643 6.52522 6.69827 6.74915 7.16813 7.31414 7.44851 7.58820 7.78019 7.89978 8.10038 8.46456 8.86729 9.47277 10.95512 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.008539 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.569296 B = 3278.282547 C = 3580.407918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.073 4.073 3 C -0.178 4.178 4 C -0.078 4.078 5 C 0.097 3.903 6 C 0.241 3.759 7 H 0.071 0.929 8 N -0.845 5.845 9 C -0.522 4.522 10 H 0.075 0.925 11 C 0.085 3.915 12 N -0.892 5.892 13 Si 0.935 3.065 14 H -0.281 1.281 15 H -0.272 1.272 16 H -0.316 1.316 17 N -0.532 5.532 18 H 0.414 0.586 19 C 0.010 3.990 20 C 0.294 3.706 21 N -0.439 5.439 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.331 0.669 29 H 0.315 0.685 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -2.766 -7.494 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.183 4.183 4 C -0.135 4.135 5 C -0.024 4.024 6 C 0.131 3.869 7 H 0.089 0.911 8 N -0.375 5.375 9 C -0.560 4.560 10 H 0.093 0.907 11 C -0.120 4.120 12 N -0.528 5.528 13 Si 0.767 3.233 14 H -0.207 1.207 15 H -0.198 1.198 16 H -0.246 1.246 17 N -0.127 5.127 18 H 0.251 0.749 19 C -0.101 4.101 20 C -0.019 4.019 21 N -0.117 5.117 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.849 -3.827 -7.208 10.654 hybrid contribution 0.532 -0.512 -0.617 0.962 sum -6.316 -4.339 -7.825 10.953 Atomic orbital electron populations 1.20231 0.90070 1.02041 1.01964 1.19717 0.94863 0.90513 1.03409 1.19025 0.91032 0.95361 1.12891 1.20120 1.01212 0.91318 1.00845 1.22130 0.99134 0.81748 0.99428 1.18603 0.79970 0.90370 0.97929 0.91133 1.59288 1.44058 1.29034 1.05079 1.20676 1.13935 1.31946 0.89492 0.90662 1.25003 0.96651 0.94329 0.96037 1.69944 1.27840 1.35191 1.19867 0.85898 0.80320 0.75375 0.81737 1.20692 1.19781 1.24572 1.41591 1.05890 1.07058 1.58164 0.74892 1.15192 0.84838 0.85527 1.24562 1.24455 0.94145 0.90956 0.92383 1.81233 1.07213 1.10641 1.12622 0.91399 0.91119 0.92534 0.92868 0.92587 0.90312 0.85553 0.87333 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.89 36.01 0.36 -0.71 16 2 C -0.07 -1.14 6.21 -104.11 -0.65 -1.79 16 3 C -0.18 -3.03 6.11 -105.00 -0.64 -3.67 16 4 C -0.08 -1.19 9.75 36.01 0.35 -0.84 16 5 C 0.10 1.75 6.00 -81.88 -0.49 1.25 16 6 C 0.24 4.90 2.07 -70.01 -0.15 4.76 16 7 H 0.07 1.48 7.04 -51.93 -0.37 1.12 16 8 N -0.84 -15.36 6.64 -6.65 -0.04 -15.41 16 9 C -0.52 -13.26 9.29 -34.44 -0.32 -13.58 16 10 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 11 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 13 Si 0.94 22.07 26.03 -169.99 -4.43 17.64 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 16 H -0.32 -7.65 7.11 56.52 0.40 -7.25 16 17 N -0.53 -8.41 5.94 -6.62 -0.04 -8.44 16 18 H 0.41 5.67 8.09 -40.82 -0.33 5.34 16 19 C 0.01 0.16 6.98 -83.50 -0.58 -0.42 16 20 C 0.29 4.65 15.48 -22.48 -0.35 4.30 16 21 N -0.44 -7.39 18.54 41.84 0.78 -6.61 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 24 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.75 8.01 -51.93 -0.42 0.34 16 27 H 0.08 1.36 7.85 -51.93 -0.41 0.96 16 28 H 0.33 5.65 8.12 -39.29 -0.32 5.33 16 29 H 0.31 4.82 9.06 -39.30 -0.36 4.46 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 265.83 15.07 4.01 4.01 Total: -1.00 -29.28 265.83 -4.97 -34.25 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.45 Total: 8.19 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -2.57 Total: -8.49 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 1.47 Total: -55.60 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.43 Total: 17.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.28 -4.97 -34.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.193 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds