Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39962 * 126.45081 * 2 1 4 4 C 1.50706 * 126.07178 * 0.02562 * 3 2 1 5 5 C 1.35361 * 107.85653 * 180.15896 * 3 2 1 6 6 C 1.50707 * 125.57536 * 179.84555 * 5 3 2 7 7 H 1.09005 * 109.46877 * 324.71507 * 6 5 3 8 8 N 1.46900 * 109.47130 * 204.71843 * 6 5 3 9 9 C 1.50696 * 109.47007 * 84.71230 * 6 5 3 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 N 1.35762 * 108.85301 * 359.57565 * 5 3 2 18 18 H 0.96992 * 125.68219 * 180.22377 * 17 5 3 19 19 C 1.37577 * 108.63752 * 0.26981 * 17 5 3 20 20 C 1.43193 * 126.22222 * 180.02562 * 19 17 5 21 21 N 3.56080 * 90.87272 * 179.68480 * 2 1 3 22 22 H 1.08994 * 109.47584 * 270.27883 * 1 2 3 23 23 H 1.09005 * 109.46914 * 30.28172 * 1 2 3 24 24 H 1.09004 * 109.46934 * 150.27254 * 1 2 3 25 25 H 1.08994 * 109.46654 * 270.16032 * 4 3 2 26 26 H 1.08997 * 109.46805 * 30.15892 * 4 3 2 27 27 H 1.08991 * 109.46887 * 150.16233 * 4 3 2 28 28 H 1.00899 * 110.99700 * 299.99445 * 8 6 5 29 29 H 1.00893 * 110.99909 * 63.95117 * 8 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3386 1.1258 0.0000 4 6 1.8859 2.5633 0.0005 5 6 3.6215 0.6942 -0.0036 6 6 4.8434 1.5764 -0.0082 7 1 4.6450 2.4687 -0.6020 8 7 5.9750 0.8425 -0.5901 9 6 5.1783 1.9779 1.4052 10 1 4.5678 1.6288 2.2248 11 6 6.2643 2.7909 1.6519 12 7 6.5569 3.1409 2.8854 13 14 7.3197 3.3953 0.2341 14 1 8.4166 2.4257 -0.0149 15 1 6.4837 3.5212 -0.9868 16 1 7.8979 4.7195 0.5769 17 7 3.6277 -0.6634 0.0037 18 1 4.4181 -1.2256 0.0062 19 6 2.3260 -1.1090 0.0059 20 6 1.8996 -2.4759 0.0137 21 7 1.5612 -3.5603 0.0196 22 1 -0.3634 0.0050 1.0276 23 1 -0.3633 0.8875 -0.5182 24 1 -0.3633 -0.8925 -0.5096 25 1 1.7737 2.9092 -1.0270 26 1 0.9295 2.6428 0.5172 27 1 2.6273 3.1774 0.5117 28 1 6.1789 0.0104 -0.0571 29 1 5.8010 0.6182 -1.5583 30 1 7.3211 3.7126 3.0589 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104517032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = 39.486231 kcal Electronic energy + Delta-G solvation = -14375.124534 eV Core-core repulsion = 11976.806244 eV Total energy + Delta-G solvation = -2398.318290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.36165 -37.69308 -36.50423 -34.32878 -33.79390 -31.79368 -28.55171 -27.83805 -27.33670 -24.51015 -21.06404 -19.95646 -19.62150 -18.97388 -17.03890 -16.56092 -16.10496 -15.91730 -15.23528 -14.50397 -14.38841 -14.29391 -13.99908 -13.70550 -13.64017 -13.58420 -13.27891 -13.15775 -12.71901 -12.60566 -12.55481 -12.06927 -11.73614 -11.43244 -10.72307 -9.52147 -9.42421 -8.79756 -8.20511 -6.35011 0.42380 1.27498 1.58510 1.63439 1.76135 1.79554 2.24387 2.42038 2.55738 3.09287 3.16590 4.07061 4.09968 4.17073 4.37402 4.63537 4.83023 4.91630 4.95433 5.12386 5.19157 5.28197 5.34278 5.45058 5.53603 5.93051 6.09552 6.14054 6.29960 6.41638 6.58915 6.77456 6.91663 7.41539 8.92202 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.008539 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.569296 B = 3278.282547 C = 3580.407918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.077 4.077 5 C 0.073 3.927 6 C 0.253 3.747 7 H 0.069 0.931 8 N -0.848 5.848 9 C -0.511 4.511 10 H 0.031 0.969 11 C 0.031 3.969 12 N -0.945 5.945 13 Si 0.996 3.004 14 H -0.280 1.280 15 H -0.252 1.252 16 H -0.327 1.327 17 N -0.526 5.526 18 H 0.422 0.578 19 C 0.012 3.988 20 C 0.309 3.691 21 N -0.453 5.453 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.339 0.661 29 H 0.338 0.662 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -3.264 -9.452 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.191 4.191 4 C -0.134 4.134 5 C -0.048 4.048 6 C 0.143 3.857 7 H 0.087 0.913 8 N -0.380 5.380 9 C -0.550 4.550 10 H 0.050 0.950 11 C -0.168 4.168 12 N -0.585 5.585 13 Si 0.826 3.174 14 H -0.206 1.206 15 H -0.176 1.176 16 H -0.258 1.258 17 N -0.122 5.122 18 H 0.261 0.739 19 C -0.100 4.100 20 C -0.004 4.004 21 N -0.132 5.132 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.767 -4.353 -9.195 12.800 hybrid contribution 0.718 -0.436 0.021 0.840 sum -7.049 -4.789 -9.174 12.522 Atomic orbital electron populations 1.20329 0.87710 1.03387 1.02823 1.20078 0.96482 0.89615 1.02363 1.19363 0.91052 0.96558 1.12145 1.20140 1.01189 0.89969 1.02085 1.21758 0.98701 0.82440 1.01948 1.18152 0.81542 0.91275 0.94764 0.91298 1.58951 1.42939 1.29510 1.06586 1.20851 1.12317 1.30616 0.91181 0.95022 1.25802 0.98200 0.94920 0.97923 1.70083 1.29039 1.37194 1.22154 0.84908 0.78752 0.74152 0.79557 1.20643 1.17572 1.25766 1.41514 1.06411 1.06461 1.57799 0.73927 1.15304 0.84882 0.85647 1.24197 1.24298 0.93629 0.90638 0.91870 1.81258 1.07794 1.11024 1.13106 0.90678 0.89287 0.91737 0.90754 0.90738 0.93032 0.84749 0.84773 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.89 71.24 0.70 -1.14 16 2 C -0.07 -2.12 6.21 -19.53 -0.12 -2.24 16 3 C -0.19 -5.98 6.11 -20.11 -0.12 -6.10 16 4 C -0.08 -2.21 9.75 71.24 0.69 -1.52 16 5 C 0.07 2.53 6.00 41.29 0.25 2.78 16 6 C 0.25 10.01 2.07 43.42 0.09 10.10 16 7 H 0.07 2.78 7.04 -2.38 -0.02 2.76 16 8 N -0.85 -29.00 6.64 -174.94 -1.16 -30.16 16 9 C -0.51 -26.30 9.29 25.60 0.24 -26.06 16 10 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 11 C 0.03 1.70 5.47 84.66 0.46 2.16 16 12 N -0.95 -56.58 13.96 21.45 0.30 -56.28 16 13 Si 1.00 45.28 26.03 68.60 1.79 47.06 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 16 H -0.33 -15.36 7.11 99.48 0.71 -14.66 16 17 N -0.53 -15.76 5.94 -174.85 -1.04 -16.80 16 18 H 0.42 10.86 8.09 -92.71 -0.75 10.11 16 19 C 0.01 0.34 6.98 39.40 0.28 0.62 16 20 C 0.31 9.11 15.48 88.33 1.37 10.48 16 21 N -0.45 -14.39 18.54 19.00 0.35 -14.04 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 1.60 8.02 -2.38 -0.02 1.58 16 24 H 0.06 1.30 7.94 -2.39 -0.02 1.28 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 1.84 8.01 -2.39 -0.02 1.82 16 27 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 28 H 0.34 10.93 8.12 -89.70 -0.73 10.20 16 29 H 0.34 9.31 9.06 -89.70 -0.81 8.50 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -63.04 265.83 2.92 -60.12 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -1.15 Total: 21.02 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.84 Total: -10.93 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -1.55 Total: -117.27 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.79 Total: 47.06 kcal Total: -63.04 2.92 -60.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.608 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds