Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21256 * 119.99824 * 2 1 4 4 C 1.47169 * 120.00282 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.16906 * 0.02636 * 4 2 1 6 6 C 1.37866 * 119.82267 * 179.97438 * 5 4 2 7 7 C 1.38428 * 120.17179 * 0.02562 * 6 5 4 8 8 C 1.38387 * 120.35121 * 359.72341 * 7 6 5 9 9 C 1.37907 * 120.16850 * 0.55092 * 8 7 6 10 10 C 1.50698 * 120.08827 * 179.72294 * 9 8 7 11 11 H 1.09000 * 109.47121 * 219.73295 * 10 9 8 12 12 N 1.46904 * 109.47049 * 339.72691 * 10 9 8 13 13 C 1.50692 * 109.47198 * 99.72808 * 10 9 8 14 14 H 1.07998 * 119.99967 * 354.50200 * 13 10 9 15 15 C 1.37882 * 120.00225 * 174.49900 * 13 10 9 16 16 N 1.31515 * 119.99881 * 163.86998 * 15 13 10 17 17 Si 1.86795 * 119.99808 * 343.87615 * 15 13 10 18 18 H 1.48499 * 109.47186 * 269.99323 * 17 15 13 19 19 H 1.48498 * 109.47272 * 29.99696 * 17 15 13 20 20 H 1.48505 * 109.47318 * 149.99642 * 17 15 13 21 21 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47114 * 300.00520 * 1 2 3 23 23 H 1.08994 * 109.46959 * 60.00830 * 1 2 3 24 24 H 1.07994 * 120.08909 * 359.95384 * 5 4 2 25 25 H 1.07998 * 119.91301 * 179.97438 * 6 5 4 26 26 H 1.08005 * 119.82385 * 180.02562 * 7 6 5 27 27 H 1.07995 * 119.91279 * 180.28023 * 8 7 6 28 28 H 1.00904 * 110.99471 * 66.09091 * 12 10 9 29 29 H 1.00901 * 110.99943 * 190.03975 * 12 10 9 30 30 H 0.97000 * 119.99985 * 354.92689 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5472 -2.4879 0.0006 6 6 2.2438 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0011 8 6 4.3236 -2.4770 -0.0041 9 6 3.6413 -1.2786 0.0016 10 6 4.4006 0.0231 0.0022 11 1 3.9034 0.7334 0.6628 12 7 5.7713 -0.2098 0.4764 13 6 4.4411 0.5817 -1.3968 14 1 4.0432 0.0064 -2.2197 15 6 4.9862 1.8272 -1.6264 16 7 5.3143 2.1863 -2.8483 17 14 5.2588 3.0043 -0.2019 18 1 4.0478 3.8430 -0.0141 19 1 5.5213 2.2294 1.0374 20 1 6.4241 3.8765 -0.4964 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.4672 -2.4928 0.0009 25 1 1.7081 -4.6154 0.0010 26 1 4.1681 -4.6087 0.0007 27 1 5.4035 -2.4820 -0.0082 28 1 6.2853 -0.7866 -0.1727 29 1 6.2498 0.6629 0.6420 30 1 5.2419 1.5499 -3.5768 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211754516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -27.264208 kcal Electronic energy + Delta-G solvation = -14838.166718 eV Core-core repulsion = 12404.661161 eV Total energy + Delta-G solvation = -2433.505557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06712 -38.92821 -36.69800 -33.99805 -32.82343 -31.14462 -30.11731 -27.70425 -24.69013 -24.16314 -21.46137 -20.67863 -19.86138 -17.87549 -17.23693 -16.44917 -15.93151 -15.86006 -15.52780 -15.15044 -15.03940 -14.55531 -14.29871 -14.02607 -13.30647 -13.07784 -12.87113 -12.83271 -12.57702 -12.26435 -11.91627 -11.66950 -11.40033 -10.67239 -10.18947 -9.78024 -9.67185 -9.45546 -8.64896 -6.40303 -0.08184 0.62794 1.35952 1.44594 1.63522 1.68389 2.39902 3.00576 3.03365 3.34475 3.93882 4.01368 4.18290 4.23487 4.40961 4.63806 4.66895 4.68023 4.76869 4.97944 5.08731 5.20753 5.30948 5.50726 5.61806 5.72336 5.87699 5.97025 6.15836 6.43188 6.52489 6.76805 6.90542 7.33672 8.58076 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.012298 C = 0.010006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.225662 B = 2276.168415 C = 2797.673810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.362 3.638 3 O -0.475 6.475 4 C -0.205 4.205 5 C -0.072 4.072 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.148 4.148 9 C -0.015 4.015 10 C 0.204 3.796 11 H 0.058 0.942 12 N -0.846 5.846 13 C -0.580 4.580 14 H 0.005 0.995 15 C -0.012 4.012 16 N -0.939 5.939 17 Si 1.086 2.914 18 H -0.287 1.287 19 H -0.245 1.245 20 H -0.283 1.283 21 H 0.111 0.889 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.167 0.833 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.328 0.672 29 H 0.327 0.673 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -11.583 8.190 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.242 3.758 3 O -0.353 6.353 4 C -0.207 4.207 5 C -0.090 4.090 6 C -0.166 4.166 7 C -0.108 4.108 8 C -0.166 4.166 9 C -0.015 4.015 10 C 0.095 3.905 11 H 0.076 0.924 12 N -0.376 5.376 13 C -0.620 4.620 14 H 0.023 0.977 15 C -0.210 4.210 16 N -0.576 5.576 17 Si 0.909 3.091 18 H -0.214 1.214 19 H -0.169 1.169 20 H -0.209 1.209 21 H 0.130 0.870 22 H 0.123 0.877 23 H 0.109 0.891 24 H 0.184 0.816 25 H 0.182 0.818 26 H 0.169 0.831 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.288 -9.873 9.201 15.838 hybrid contribution 0.020 -0.713 -2.033 2.154 sum -8.268 -10.586 7.169 15.225 Atomic orbital electron populations 1.22208 0.90531 1.06432 1.05161 1.23262 0.93510 0.87653 0.71348 1.90579 1.72497 1.35750 1.36436 1.20698 0.93769 0.96479 1.09707 1.21798 1.01341 0.90387 0.95447 1.21472 0.94007 0.98987 1.02179 1.21735 0.95408 0.97781 0.95904 1.21131 1.00708 0.92082 1.02663 1.20537 0.93515 0.96120 0.91377 1.18433 0.86871 0.91445 0.93768 0.92420 1.59817 1.04968 1.21268 1.51588 1.22343 1.42007 1.04545 0.93074 0.97661 1.26951 0.92770 0.98945 1.02383 1.70928 1.46715 1.38640 1.01324 0.83503 0.76718 0.74837 0.74018 1.21389 1.16896 1.20870 0.87027 0.87735 0.89137 0.81611 0.81807 0.83061 0.85975 0.86035 0.85964 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.62 10.19 71.24 0.73 -3.90 16 2 C 0.36 14.13 7.17 28.03 0.20 14.33 16 3 O -0.48 -23.70 13.09 -2.95 -0.04 -23.74 16 4 C -0.21 -7.83 5.87 -20.15 -0.12 -7.95 16 5 C -0.07 -1.94 9.45 22.58 0.21 -1.73 16 6 C -0.15 -3.55 10.03 22.23 0.22 -3.33 16 7 C -0.09 -2.51 10.04 22.35 0.22 -2.29 16 8 C -0.15 -5.51 9.26 22.23 0.21 -5.30 16 9 C -0.01 -0.64 5.06 -19.56 -0.10 -0.74 16 10 C 0.20 10.39 1.70 43.42 0.07 10.47 16 11 H 0.06 3.16 4.53 -2.39 -0.01 3.15 16 12 N -0.85 -38.64 8.50 -174.96 -1.49 -40.13 16 13 C -0.58 -34.58 7.66 25.60 0.20 -34.38 16 14 H 0.00 0.34 7.99 -2.91 -0.02 0.31 16 15 C -0.01 -0.74 5.44 84.66 0.46 -0.28 16 16 N -0.94 -61.24 13.70 21.45 0.29 -60.95 16 17 Si 1.09 54.87 26.56 68.60 1.82 56.69 16 18 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 19 H -0.24 -11.09 5.45 99.48 0.54 -10.55 16 20 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 21 H 0.11 1.89 5.61 -2.38 -0.01 1.88 16 22 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.17 2.94 5.93 -2.91 -0.02 2.92 16 25 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.12 4.50 6.41 -2.91 -0.02 4.49 16 28 H 0.33 14.45 7.59 -89.69 -0.68 13.77 16 29 H 0.33 14.84 5.75 -89.69 -0.52 14.32 16 30 H 0.25 16.62 8.73 -92.71 -0.81 15.81 16 Total: -1.00 -77.00 248.31 2.68 -74.32 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.22 Total: 28.90 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 2.31 Total: -35.09 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -1.19 Total: -101.08 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 54.87 SS G_CDS: 1.82 Total: 56.69 kcal Total: -77.00 2.68 -74.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211754516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.057 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds