Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21257 * 119.99789 * 2 1 4 4 C 1.47171 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.39871 * 120.17058 * 0.02562 * 4 2 1 6 6 C 1.37865 * 119.82345 * 180.02562 * 5 4 2 7 7 C 1.38428 * 120.16963 * 0.02562 * 6 5 4 8 8 C 1.38375 * 120.35421 * 359.95477 * 7 6 5 9 9 C 1.50699 * 119.91777 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47221 * 200.00937 * 9 8 7 11 11 N 1.46899 * 109.46898 * 320.00372 * 9 8 7 12 12 C 1.50702 * 109.46959 * 80.00615 * 9 8 7 13 13 H 1.07991 * 119.99655 * 325.27052 * 12 9 8 14 14 C 1.37874 * 119.99790 * 145.27087 * 12 9 8 15 15 N 1.31511 * 119.99774 * 178.21785 * 14 12 9 16 16 Si 1.86797 * 120.00386 * 358.22457 * 14 12 9 17 17 H 1.48498 * 109.47244 * 268.49181 * 16 14 12 18 18 H 1.48507 * 109.47024 * 28.49001 * 16 14 12 19 19 H 1.48497 * 109.47254 * 148.48756 * 16 14 12 20 20 C 1.37909 * 120.16896 * 0.28152 * 8 7 6 21 21 H 1.09000 * 109.47225 * 239.99391 * 1 2 3 22 22 H 1.08993 * 109.47530 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47099 * 120.00521 * 1 2 3 24 24 H 1.08003 * 120.08752 * 359.97438 * 5 4 2 25 25 H 1.08000 * 119.91403 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.82274 * 179.97438 * 7 6 5 27 27 H 1.00904 * 110.99890 * 66.40950 * 11 9 8 28 28 H 1.00903 * 110.99918 * 190.35956 * 11 9 8 29 29 H 0.97000 * 120.00153 * 179.97438 * 15 14 12 30 30 H 1.08004 * 120.09121 * 179.73845 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5472 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0016 7 6 3.6280 -3.6733 0.0032 8 6 4.3235 -2.4771 0.0029 9 6 5.8305 -2.4839 0.0052 10 1 6.1976 -1.5194 0.3562 11 7 6.3140 -3.5460 0.8974 12 6 6.3339 -2.7344 -1.3930 13 1 5.7872 -3.3903 -2.0542 14 6 7.4923 -2.1262 -1.8279 15 7 7.9505 -2.3722 -3.0359 16 14 8.4110 -0.9531 -0.7015 17 1 7.9297 0.4328 -0.9314 18 1 8.1680 -1.3331 0.7134 19 1 9.8657 -1.0263 -0.9908 20 6 3.6412 -1.2786 0.0067 21 1 -0.3634 -0.5139 0.8899 22 1 -0.3634 1.0276 -0.0005 23 1 -0.3633 -0.5139 -0.8899 24 1 0.4671 -2.4928 0.0006 25 1 1.7080 -4.6154 0.0021 26 1 4.1680 -4.6086 0.0045 27 1 6.0755 -4.4577 0.5367 28 1 7.3083 -3.4659 1.0493 29 1 8.7652 -1.9441 -3.3420 30 1 4.1853 -0.3457 0.0107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211756644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -21.246804 kcal Electronic energy + Delta-G solvation = -14208.118481 eV Core-core repulsion = 11774.873857 eV Total energy + Delta-G solvation = -2433.244623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.63838 -37.99234 -34.83488 -32.11170 -31.16010 -30.38149 -28.78557 -26.25392 -23.54117 -22.45905 -20.83810 -18.68244 -17.24658 -16.68739 -15.38554 -15.22494 -14.86977 -14.78082 -14.38194 -13.70834 -13.36074 -12.84997 -12.76163 -12.39271 -12.20903 -12.00554 -11.63178 -11.35677 -11.14677 -10.90978 -10.63075 -9.94006 -9.59960 -9.46828 -8.82206 -8.47710 -8.25946 -7.50843 -6.27116 -4.31428 1.10004 1.93522 2.78727 3.18357 3.26994 3.28936 4.24436 4.28625 4.33621 5.06849 5.09040 5.22526 5.36064 5.40233 5.46403 5.59120 5.85846 5.93509 5.94887 6.21604 6.28138 6.49548 6.65228 6.75443 6.96340 7.25933 7.44235 7.46980 7.75882 8.16054 8.25337 8.51645 8.77921 9.33609 10.85131 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.008817 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.999267 B = 3175.095116 C = 3632.880680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.395 3.605 3 O -0.465 6.465 4 C -0.180 4.180 5 C -0.099 4.099 6 C -0.138 4.138 7 C -0.075 4.075 8 C -0.030 4.030 9 C 0.205 3.795 10 H 0.052 0.948 11 N -0.852 5.852 12 C -0.546 4.546 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.888 5.888 16 Si 0.872 3.128 17 H -0.273 1.273 18 H -0.259 1.259 19 H -0.285 1.285 20 C -0.063 4.063 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.327 0.673 28 H 0.329 0.671 29 H 0.267 0.733 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 -0.658 6.542 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.274 3.726 3 O -0.342 6.342 4 C -0.180 4.180 5 C -0.117 4.117 6 C -0.156 4.156 7 C -0.094 4.094 8 C -0.031 4.031 9 C 0.096 3.904 10 H 0.070 0.930 11 N -0.380 5.380 12 C -0.585 4.585 13 H 0.093 0.907 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.183 1.183 19 H -0.211 1.211 20 C -0.082 4.082 21 H 0.109 0.891 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.077 0.923 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.958 0.273 6.959 13.839 hybrid contribution 1.130 0.214 -0.587 1.291 sum -10.829 0.487 6.372 12.574 Atomic orbital electron populations 1.22221 0.94326 1.04546 1.04322 1.22531 0.91391 0.87948 0.70745 1.90521 1.72275 1.34477 1.36889 1.20325 0.94534 0.94255 1.08933 1.21142 0.99049 0.91687 0.99849 1.21021 0.94489 0.97535 1.02517 1.21183 0.93456 0.98444 0.96310 1.20160 0.97364 0.91956 0.93615 1.18465 0.87012 0.92857 0.92059 0.92963 1.59591 1.19430 1.06635 1.52333 1.21591 1.08990 1.30009 0.97958 0.90680 1.25098 0.96929 0.95746 0.94917 1.69900 1.22392 1.42787 1.17369 0.86909 0.79248 0.82120 0.81864 1.19828 1.18311 1.21114 1.21257 0.92576 0.98613 0.95776 0.89074 0.90168 0.89016 0.86093 0.86265 0.85977 0.86119 0.85956 0.92317 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 8.93 36.00 0.32 -1.69 16 2 C 0.39 6.18 7.23 -30.68 -0.22 5.96 16 3 O -0.47 -8.97 17.08 5.58 0.10 -8.87 16 4 C -0.18 -3.06 5.87 -105.06 -0.62 -3.67 16 5 C -0.10 -1.41 9.47 -39.11 -0.37 -1.78 16 6 C -0.14 -2.06 10.03 -39.65 -0.40 -2.46 16 7 C -0.08 -1.37 9.30 -39.46 -0.37 -1.73 16 8 C -0.03 -0.63 4.93 -104.69 -0.52 -1.15 16 9 C 0.21 4.74 2.54 -70.02 -0.18 4.56 16 10 H 0.05 1.26 5.16 -51.93 -0.27 0.99 16 11 N -0.85 -17.46 8.97 -6.65 -0.06 -17.52 16 12 C -0.55 -14.71 9.07 -34.44 -0.31 -15.02 16 13 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 15 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 16 Si 0.87 20.82 26.91 -169.99 -4.57 16.24 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.26 -5.84 6.37 56.52 0.36 -5.48 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.06 -1.29 9.21 -39.11 -0.36 -1.65 16 21 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 22 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 23 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.12 1.26 7.05 -52.48 -0.37 0.89 16 25 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.12 2.09 6.79 -52.49 -0.36 1.74 16 27 H 0.33 6.29 7.55 -39.29 -0.30 5.99 16 28 H 0.33 6.68 8.59 -39.29 -0.34 6.35 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.13 2.65 7.62 -52.48 -0.40 2.25 16 LS Contribution 261.04 15.07 3.93 3.93 Total: -1.00 -31.02 261.04 -6.26 -37.28 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.31 Total: 11.09 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.12 Total: -16.58 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.71 Total: -43.09 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.10 Total: -8.87 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.57 Total: 16.24 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.02 -6.26 -37.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211756644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds