Wall clock time and date at job start Mon Mar 30 2020 02:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.39858 * 110.99893 * 2 1 4 4 C 1.39140 * 118.59451 * 75.06337 * 3 2 1 5 5 C 1.38067 * 120.24014 * 180.49945 * 4 3 2 6 6 C 1.38259 * 120.11406 * 359.94441 * 5 4 3 7 7 C 1.38178 * 120.02614 * 359.93228 * 6 5 4 8 8 C 1.38770 * 120.21037 * 0.02562 * 7 6 5 9 9 O 1.36151 * 118.75110 * 180.21539 * 8 7 6 10 10 C 1.43138 * 116.67661 * 194.97277 * 9 8 7 11 11 C 1.46753 * 111.00157 * 234.59127 * 2 1 3 12 12 H 1.09001 * 109.61619 * 194.23464 * 11 2 1 13 13 C 1.50703 * 109.76431 * 314.68380 * 11 2 1 14 14 H 1.08001 * 119.99752 * 4.91165 * 13 11 2 15 15 C 1.37879 * 119.99967 * 184.92040 * 13 11 2 16 16 N 1.31514 * 119.99914 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99939 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46993 * 60.00139 * 17 15 13 19 19 H 1.48496 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47104 * 300.00121 * 17 15 13 21 21 H 1.09002 * 109.47367 * 193.11827 * 1 2 3 22 22 H 1.08999 * 109.47502 * 313.11773 * 1 2 3 23 23 H 1.08997 * 109.47505 * 73.12045 * 1 2 3 24 24 H 1.08007 * 119.88123 * 0.45652 * 4 3 2 25 25 H 1.07999 * 119.94304 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.97983 * 179.97438 * 6 5 4 27 27 H 1.08001 * 119.89001 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.77507 * 195.06169 * 10 9 8 29 29 H 1.08997 * 109.77788 * 74.26428 * 10 9 8 30 30 H 0.97006 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9701 1.3057 0.0000 4 6 1.9148 2.0402 1.1804 5 6 2.3904 3.3359 1.2161 6 6 2.9256 3.9099 0.0778 7 6 2.9868 3.1867 -1.0980 8 6 2.5117 1.8837 -1.1418 9 8 2.5906 1.1969 -2.3148 10 6 1.8071 0.0032 -2.4145 11 6 1.9949 -0.7938 -1.1166 12 1 3.0552 -0.9909 -0.9581 13 6 1.2465 -2.0984 -1.2115 14 1 0.4040 -2.2860 -0.5623 15 6 1.6374 -3.0525 -2.1268 16 7 2.6632 -2.8239 -2.9175 17 14 0.7102 -4.6699 -2.2438 18 1 -0.7094 -4.4028 -2.5882 19 1 1.3245 -5.5176 -3.2970 20 1 0.7787 -5.3753 -0.9389 21 1 -0.3634 -1.0008 0.2332 22 1 -0.3634 0.7024 0.7501 23 1 -0.3634 0.2984 -0.9833 24 1 1.4976 1.5955 2.0719 25 1 2.3447 3.9018 2.1348 26 1 3.2967 4.9237 0.1081 27 1 3.4050 3.6375 -1.9859 28 1 2.1458 -0.5904 -3.2637 29 1 0.7557 0.2615 -2.5402 30 1 2.9384 -3.4953 -3.5613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213111765.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:20 Heat of formation + Delta-G solvation = 0.238341 kcal Electronic energy + Delta-G solvation = -14940.830368 eV Core-core repulsion = 12508.517410 eV Total energy + Delta-G solvation = -2432.312957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26088 -36.85585 -35.76847 -32.93942 -29.87378 -29.75635 -27.67707 -25.57879 -24.41717 -22.44808 -21.67833 -19.14396 -17.29607 -16.56120 -15.98638 -15.49825 -14.62974 -14.18366 -14.10257 -13.63233 -13.52942 -13.11743 -12.80316 -12.18443 -11.75380 -11.61694 -11.14635 -11.00193 -10.87134 -10.77800 -10.60480 -10.15424 -9.91658 -9.34120 -8.69771 -8.55641 -7.66136 -7.08534 -6.27207 -4.33382 1.82766 1.96359 3.20792 3.26320 3.28109 4.17962 4.24025 4.28383 4.76450 5.06274 5.31607 5.40709 5.76710 5.84622 5.91139 6.07573 6.11142 6.27381 6.37508 6.42757 6.56738 6.69118 6.89256 6.95206 7.02768 7.19332 7.26861 7.57921 7.77578 7.91675 8.26496 8.39505 8.72153 9.33328 10.81847 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053070 B = 0.008863 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.474794 B = 3158.322469 C = 3515.450669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.493 5.493 3 C 0.041 3.959 4 C -0.097 4.097 5 C -0.152 4.152 6 C -0.114 4.114 7 C -0.146 4.146 8 C 0.094 3.906 9 O -0.324 6.324 10 C 0.028 3.972 11 C 0.186 3.814 12 H 0.061 0.939 13 C -0.520 4.520 14 H 0.073 0.927 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.026 0.974 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.042 0.958 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 8.287 3.950 9.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.209 5.209 3 C -0.057 4.057 4 C -0.117 4.117 5 C -0.171 4.171 6 C -0.133 4.133 7 C -0.165 4.165 8 C 0.045 3.955 9 O -0.238 6.238 10 C -0.048 4.048 11 C 0.079 3.921 12 H 0.079 0.921 13 C -0.557 4.557 14 H 0.091 0.909 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.100 0.900 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.061 0.939 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.979 7.927 4.042 9.115 hybrid contribution -0.679 -0.764 -0.753 1.269 sum -2.658 7.163 3.289 8.318 Atomic orbital electron populations 1.22348 0.86342 1.02370 0.99288 1.59322 1.07869 1.07538 1.46207 1.19146 1.03332 0.90651 0.92566 1.20807 1.00626 0.93993 0.96243 1.20775 1.02624 0.95480 0.98229 1.20727 1.00818 0.99247 0.92526 1.20396 1.05005 0.92046 0.99069 1.19266 0.99204 0.91380 0.85663 1.86237 1.65879 1.39601 1.32062 1.24058 0.92691 0.82559 1.05442 1.20034 0.98116 0.91145 0.82756 0.92094 1.21043 1.15574 0.98975 1.20158 0.90919 1.25024 0.94935 0.98836 0.95240 1.69883 1.25485 1.35479 1.21772 0.86430 0.79750 0.82586 0.77997 1.20051 1.21062 1.19933 0.90039 0.93237 0.95501 0.86035 0.86578 0.86337 0.86042 0.85141 0.93949 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 8.76 60.06 0.53 1.36 16 2 N -0.49 -11.12 4.76 -172.37 -0.82 -11.94 16 3 C 0.04 0.86 5.12 -83.59 -0.43 0.43 16 4 C -0.10 -1.71 9.31 -39.31 -0.37 -2.07 16 5 C -0.15 -2.31 10.03 -39.64 -0.40 -2.71 16 6 C -0.11 -1.73 10.04 -39.60 -0.40 -2.13 16 7 C -0.15 -2.61 9.94 -39.41 -0.39 -3.00 16 8 C 0.09 2.01 6.47 -39.12 -0.25 1.76 16 9 O -0.32 -7.65 10.40 -20.22 -0.21 -7.86 16 10 C 0.03 0.69 6.20 37.39 0.23 0.93 16 11 C 0.19 4.73 2.31 -68.71 -0.16 4.57 16 12 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.52 -13.60 7.99 -34.44 -0.28 -13.87 16 14 H 0.07 1.84 5.67 -52.49 -0.30 1.55 16 15 C 0.06 1.66 5.32 -17.82 -0.09 1.56 16 16 N -0.89 -24.39 11.76 55.43 0.65 -23.74 16 17 Si 0.91 20.33 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.08 1.61 6.11 -51.93 -0.32 1.29 16 22 H 0.05 0.84 7.58 -51.93 -0.39 0.45 16 23 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 24 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 25 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 28 H 0.13 3.41 6.53 -51.93 -0.34 3.07 16 29 H 0.04 1.00 6.59 -51.93 -0.34 0.66 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 246.94 15.07 3.72 3.72 Total: -1.00 -27.88 246.94 -6.96 -34.84 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.28 Total: 2.86 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.00 Total: -13.18 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.17 Total: -35.68 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.21 Total: -7.86 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.88 -6.96 -34.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213111765.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.076 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds