Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.39858 * 110.99893 * 2 1 4 4 C 1.39140 * 118.59451 * 75.06337 * 3 2 1 5 5 C 1.38067 * 120.24014 * 180.49945 * 4 3 2 6 6 C 1.38259 * 120.11406 * 359.94441 * 5 4 3 7 7 C 1.38178 * 120.02614 * 359.93228 * 6 5 4 8 8 C 1.38770 * 120.21037 * 0.02562 * 7 6 5 9 9 O 1.36151 * 118.75110 * 180.21539 * 8 7 6 10 10 C 1.43138 * 116.67661 * 194.97277 * 9 8 7 11 11 C 1.46753 * 111.00157 * 234.59127 * 2 1 3 12 12 H 1.09001 * 109.61619 * 194.23464 * 11 2 1 13 13 C 1.50703 * 109.76431 * 314.68380 * 11 2 1 14 14 H 1.08001 * 119.99752 * 4.91165 * 13 11 2 15 15 C 1.37879 * 119.99967 * 184.92040 * 13 11 2 16 16 N 1.31514 * 119.99914 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99939 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46993 * 60.00139 * 17 15 13 19 19 H 1.48496 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47104 * 300.00121 * 17 15 13 21 21 H 1.09002 * 109.47367 * 193.11827 * 1 2 3 22 22 H 1.08999 * 109.47502 * 313.11773 * 1 2 3 23 23 H 1.08997 * 109.47505 * 73.12045 * 1 2 3 24 24 H 1.08007 * 119.88123 * 0.45652 * 4 3 2 25 25 H 1.07999 * 119.94304 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.97983 * 179.97438 * 6 5 4 27 27 H 1.08001 * 119.89001 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.77507 * 195.06169 * 10 9 8 29 29 H 1.08997 * 109.77788 * 74.26428 * 10 9 8 30 30 H 0.97006 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9701 1.3057 0.0000 4 6 1.9148 2.0402 1.1804 5 6 2.3904 3.3359 1.2161 6 6 2.9256 3.9099 0.0778 7 6 2.9868 3.1867 -1.0980 8 6 2.5117 1.8837 -1.1418 9 8 2.5906 1.1969 -2.3148 10 6 1.8071 0.0032 -2.4145 11 6 1.9949 -0.7938 -1.1166 12 1 3.0552 -0.9909 -0.9581 13 6 1.2465 -2.0984 -1.2115 14 1 0.4040 -2.2860 -0.5623 15 6 1.6374 -3.0525 -2.1268 16 7 2.6632 -2.8239 -2.9175 17 14 0.7102 -4.6699 -2.2438 18 1 -0.7094 -4.4028 -2.5882 19 1 1.3245 -5.5176 -3.2970 20 1 0.7787 -5.3753 -0.9389 21 1 -0.3634 -1.0008 0.2332 22 1 -0.3634 0.7024 0.7501 23 1 -0.3634 0.2984 -0.9833 24 1 1.4976 1.5955 2.0719 25 1 2.3447 3.9018 2.1348 26 1 3.2967 4.9237 0.1081 27 1 3.4050 3.6375 -1.9859 28 1 2.1458 -0.5904 -3.2637 29 1 0.7557 0.2615 -2.5402 30 1 2.9384 -3.4953 -3.5613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213111765.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -17.741687 kcal Electronic energy + Delta-G solvation = -14941.610040 eV Core-core repulsion = 12508.517410 eV Total energy + Delta-G solvation = -2433.092630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88586 -38.35722 -37.48810 -34.87296 -31.46224 -31.26775 -29.36018 -27.44586 -26.12660 -24.12658 -23.14021 -20.81195 -18.94057 -18.46153 -17.68017 -17.09122 -16.43644 -15.90784 -15.54244 -15.34487 -15.12204 -14.63063 -14.49652 -13.92425 -13.35384 -13.19778 -12.85999 -12.65656 -12.62606 -12.29642 -12.07725 -12.02124 -11.69655 -11.25418 -10.68895 -10.10786 -9.20361 -8.69269 -8.28444 -6.42405 0.45155 0.55521 1.41989 1.43906 1.52126 2.34371 2.54767 2.85698 3.03033 3.15452 3.85472 4.14514 4.24228 4.35380 4.44699 4.56363 4.57648 4.61452 4.70398 4.89917 5.00461 5.08178 5.26244 5.38151 5.49452 5.61345 5.64429 5.81971 5.92664 6.14288 6.47904 6.68311 6.73071 7.28526 8.80943 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053070 B = 0.008863 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.474794 B = 3158.322469 C = 3515.450669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.503 5.503 3 C 0.008 3.992 4 C -0.100 4.100 5 C -0.134 4.134 6 C -0.099 4.099 7 C -0.150 4.150 8 C 0.047 3.953 9 O -0.344 6.344 10 C 0.043 3.957 11 C 0.193 3.807 12 H 0.011 0.989 13 C -0.534 4.534 14 H 0.079 0.921 15 C 0.015 3.985 16 N -0.921 5.921 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.015 0.985 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.164 0.836 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.044 0.956 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 9.964 5.717 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.219 5.219 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.152 4.152 6 C -0.117 4.117 7 C -0.169 4.169 8 C 0.000 4.000 9 O -0.259 6.259 10 C -0.033 4.033 11 C 0.086 3.914 12 H 0.029 0.971 13 C -0.571 4.571 14 H 0.097 0.903 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.034 0.966 24 H 0.155 0.845 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.759 9.635 5.831 11.595 hybrid contribution -0.371 -1.087 -1.200 1.661 sum -3.130 8.548 4.630 10.213 Atomic orbital electron populations 1.22361 0.84987 1.02938 0.99611 1.59294 1.09198 1.08717 1.44721 1.19451 1.04913 0.90497 0.93996 1.21078 1.00677 0.94944 0.95305 1.21312 0.99714 0.94328 0.99888 1.21270 0.98733 1.00722 0.91022 1.20747 1.04432 0.90742 1.01011 1.19773 1.02141 0.92954 0.85158 1.86157 1.66384 1.39391 1.33982 1.23642 0.92638 0.82999 1.04048 1.19671 0.95355 0.92017 0.84359 0.97120 1.21346 1.15826 0.99596 1.20349 0.90300 1.25894 0.95659 1.02283 0.94728 1.70030 1.26954 1.36548 1.22360 0.85367 0.78769 0.78151 0.77965 1.18904 1.20893 1.19453 0.90426 0.90199 0.96607 0.84514 0.82083 0.81812 0.84851 0.87698 0.93795 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.83 8.76 127.69 1.12 2.94 16 2 N -0.50 -23.11 4.76 -699.26 -3.33 -26.43 16 3 C 0.01 0.35 5.12 38.25 0.20 0.55 16 4 C -0.10 -3.27 9.31 22.45 0.21 -3.06 16 5 C -0.13 -3.41 10.03 22.23 0.22 -3.19 16 6 C -0.10 -2.55 10.04 22.26 0.22 -2.33 16 7 C -0.15 -5.10 9.94 22.38 0.22 -4.88 16 8 C 0.05 2.05 6.47 22.57 0.15 2.19 16 9 O -0.34 -17.08 10.40 -95.27 -0.99 -18.07 16 10 C 0.04 2.24 6.20 72.13 0.45 2.69 16 11 C 0.19 10.34 2.31 44.35 0.10 10.44 16 12 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 13 C -0.53 -28.80 7.99 25.60 0.20 -28.59 16 14 H 0.08 4.06 5.67 -2.91 -0.02 4.04 16 15 C 0.01 0.79 5.32 84.66 0.45 1.24 16 16 N -0.92 -52.63 11.76 21.45 0.25 -52.38 16 17 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H 0.08 3.06 6.11 -2.39 -0.01 3.04 16 22 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 23 H 0.02 0.64 6.49 -2.39 -0.02 0.62 16 24 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 26 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 28 H 0.11 5.88 6.53 -2.39 -0.02 5.86 16 29 H 0.04 2.19 6.59 -2.39 -0.02 2.17 16 30 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -63.42 246.94 2.65 -60.78 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.14 Total: 13.91 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.54 Total: -22.00 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -3.07 Total: -78.81 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.99 Total: -18.07 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -63.42 2.65 -60.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213111765.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.034 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds