Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.39852 * 111.00196 * 2 1 4 4 C 1.39144 * 118.59061 * 35.32773 * 3 2 1 5 5 C 1.38070 * 120.23889 * 179.80230 * 4 3 2 6 6 C 1.38253 * 120.12092 * 0.02562 * 5 4 3 7 7 C 1.38178 * 120.02299 * 0.07916 * 6 5 4 8 8 C 1.38774 * 120.20735 * 359.97438 * 7 6 5 9 9 O 1.36153 * 118.74253 * 179.74778 * 8 7 6 10 10 C 1.43151 * 116.66609 * 165.19700 * 9 8 7 11 11 C 1.46758 * 111.00339 * 234.58091 * 2 1 3 12 12 H 1.08999 * 109.61151 * 55.08571 * 11 2 1 13 13 C 1.50700 * 109.61275 * 294.73406 * 11 2 1 14 14 H 1.07999 * 120.00479 * 0.27283 * 13 11 2 15 15 C 1.37879 * 119.99533 * 179.97438 * 13 11 2 16 16 N 1.31519 * 120.00318 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99911 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46895 * 60.00030 * 17 15 13 19 19 H 1.48493 * 109.47310 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46999 * 300.00488 * 17 15 13 21 21 H 1.09001 * 109.47197 * 178.33242 * 1 2 3 22 22 H 1.08994 * 109.47281 * 298.33887 * 1 2 3 23 23 H 1.09007 * 109.46915 * 58.34022 * 1 2 3 24 24 H 1.08000 * 119.88039 * 359.80509 * 4 3 2 25 25 H 1.07999 * 119.93884 * 180.02562 * 5 4 3 26 26 H 1.07999 * 119.98863 * 180.09942 * 6 5 4 27 27 H 1.08004 * 119.89659 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.80201 * 285.75730 * 10 9 8 29 29 H 1.08997 * 109.77037 * 164.94266 * 10 9 8 30 30 H 0.97000 * 120.00085 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9702 1.3056 0.0000 4 6 1.2783 2.2845 0.7065 5 6 1.7449 3.5837 0.7328 6 6 2.9030 3.9188 0.0561 7 6 3.5952 2.9535 -0.6498 8 6 3.1322 1.6456 -0.6821 9 8 3.8348 0.7197 -1.3911 10 6 3.5227 -0.6545 -1.1394 11 6 1.9950 -0.7940 -1.1165 12 1 1.5775 -0.4279 -2.0545 13 6 1.6218 -2.2418 -0.9276 14 1 1.0459 -2.5430 -0.0651 15 6 2.0104 -3.1810 -1.8592 16 7 2.7063 -2.8134 -2.9130 17 14 1.5485 -4.9758 -1.6248 18 1 0.0696 -5.1046 -1.5807 19 1 2.0820 -5.7761 -2.7561 20 1 2.1268 -5.4734 -0.3508 21 1 -0.3633 -1.0272 -0.0299 22 1 -0.3633 0.4878 0.9044 23 1 -0.3633 0.5394 -0.8748 24 1 0.3730 2.0271 1.2362 25 1 1.2042 4.3395 1.2831 26 1 3.2669 4.9354 0.0794 27 1 4.4994 3.2176 -1.1781 28 1 3.9351 -0.9565 -0.1766 29 1 3.9380 -1.2780 -1.9311 30 1 2.9799 -3.4742 -3.5682 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213111827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = -1.558255 kcal Electronic energy + Delta-G solvation = -14895.537925 eV Core-core repulsion = 12463.147061 eV Total energy + Delta-G solvation = -2432.390864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15791 -36.74562 -35.92089 -33.05340 -29.78636 -29.68712 -28.04935 -25.62992 -24.16691 -22.48436 -21.32176 -19.21032 -17.42595 -16.76186 -15.95649 -15.46028 -14.53429 -14.12511 -14.08726 -13.63512 -13.39617 -13.22373 -12.85677 -12.15831 -11.72642 -11.48148 -11.41761 -11.00870 -10.95413 -10.81540 -10.30696 -10.00468 -9.91683 -9.53768 -8.94808 -8.64933 -7.83950 -6.76152 -6.28071 -4.35133 1.89200 2.00819 3.20198 3.25563 3.27763 4.13471 4.20154 4.43290 4.76012 5.03690 5.26123 5.43118 5.75636 5.84573 5.93004 6.05594 6.09406 6.30309 6.37005 6.50480 6.59659 6.68885 6.74586 6.99706 7.02663 7.16820 7.38832 7.52880 7.71394 7.92077 8.27111 8.34143 8.71128 9.31299 10.79449 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.008971 C = 0.007843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.335803 B = 3120.418696 C = 3569.234649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.489 5.489 3 C 0.060 3.940 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.137 4.137 8 C 0.093 3.907 9 O -0.329 6.329 10 C 0.060 3.940 11 C 0.186 3.814 12 H 0.025 0.975 13 C -0.513 4.513 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.026 0.974 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.049 0.951 29 H 0.139 0.861 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 7.509 4.245 8.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.203 5.203 3 C -0.040 4.040 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.156 4.156 8 C 0.045 3.955 9 O -0.244 6.244 10 C -0.014 4.014 11 C 0.081 3.919 12 H 0.043 0.957 13 C -0.551 4.551 14 H 0.088 0.912 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.045 0.955 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.183 7.094 4.326 8.392 hybrid contribution -0.536 -0.825 -0.398 1.061 sum -1.719 6.269 3.928 7.595 Atomic orbital electron populations 1.22325 0.85768 1.03154 0.99419 1.58696 1.08420 1.07858 1.45297 1.19289 0.95572 0.90325 0.98826 1.20839 1.00954 0.92396 1.02145 1.20714 0.97435 0.95780 1.01647 1.20643 0.96346 0.98358 0.99820 1.20374 1.01285 0.90841 1.03103 1.18862 0.92237 0.90377 0.94067 1.86186 1.59812 1.17718 1.60647 1.23710 0.98241 0.76748 1.02724 1.19943 0.91749 0.93642 0.86602 0.95725 1.20916 1.35591 0.90127 1.08512 0.91169 1.25015 0.94712 0.99796 0.94606 1.69817 1.37064 1.34895 1.11175 0.86387 0.78916 0.83336 0.77866 1.20036 1.21039 1.19935 0.89699 0.92309 0.95504 0.86013 0.86771 0.86474 0.85946 0.93256 0.84361 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.75 60.06 0.53 1.29 16 2 N -0.49 -11.07 4.63 -172.39 -0.80 -11.87 16 3 C 0.06 1.28 5.82 -83.59 -0.49 0.80 16 4 C -0.14 -2.53 9.07 -39.31 -0.36 -2.88 16 5 C -0.14 -2.13 10.03 -39.64 -0.40 -2.53 16 6 C -0.13 -2.06 10.04 -39.60 -0.40 -2.46 16 7 C -0.14 -2.49 9.94 -39.41 -0.39 -2.88 16 8 C 0.09 2.03 6.47 -39.12 -0.25 1.77 16 9 O -0.33 -7.87 10.40 -20.23 -0.21 -8.08 16 10 C 0.06 1.51 6.35 37.37 0.24 1.74 16 11 C 0.19 4.72 1.87 -68.73 -0.13 4.59 16 12 H 0.03 0.71 8.13 -51.93 -0.42 0.28 16 13 C -0.51 -13.51 7.87 -34.44 -0.27 -13.78 16 14 H 0.07 1.82 7.09 -52.49 -0.37 1.45 16 15 C 0.06 1.61 5.31 -17.82 -0.09 1.52 16 16 N -0.89 -24.25 11.39 55.43 0.63 -23.62 16 17 Si 0.91 20.32 29.54 -169.99 -5.02 15.29 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H 0.08 1.68 6.64 -51.93 -0.34 1.33 16 22 H 0.06 0.96 6.27 -51.93 -0.33 0.63 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.12 1.93 6.07 -52.49 -0.32 1.61 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.14 3.65 6.13 -51.93 -0.32 3.33 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 247.90 15.07 3.74 3.74 Total: -1.00 -27.93 247.90 -7.03 -34.95 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.35 Total: 2.41 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.01 Total: -12.81 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.17 Total: -35.50 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.21 Total: -8.08 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.93 -7.03 -34.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213111827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.397 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds