Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.82304 * 2 1 4 4 N 1.47286 * 109.83474 * 120.89306 * 2 1 3 5 5 C 1.40387 * 117.70990 * 77.53108 * 4 2 1 6 6 C 1.38586 * 120.08669 * 193.70626 * 5 4 2 7 7 C 1.38284 * 119.87415 * 180.33163 * 6 5 4 8 8 C 1.38254 * 120.05827 * 0.02562 * 7 6 5 9 9 C 1.38243 * 120.29583 * 359.89927 * 8 7 6 10 10 C 1.38665 * 120.05431 * 0.04295 * 9 8 7 11 11 O 1.35946 * 119.66237 * 180.37954 * 10 9 8 12 12 C 1.42998 * 117.71767 * 200.26087 * 11 10 9 13 13 H 1.09003 * 109.74601 * 70.29211 * 12 11 10 14 14 C 1.50705 * 109.56436 * 190.65714 * 12 11 10 15 15 H 1.07999 * 119.99553 * 119.26301 * 14 12 11 16 16 C 1.37875 * 119.99825 * 299.26085 * 14 12 11 17 17 N 1.31514 * 119.99744 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 120.00206 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47188 * 89.99863 * 18 16 14 20 20 H 1.48499 * 109.47119 * 210.00100 * 18 16 14 21 21 H 1.48498 * 109.46951 * 330.00028 * 18 16 14 22 22 H 1.08993 * 109.47169 * 299.10225 * 1 2 3 23 23 H 1.09003 * 109.47149 * 59.10714 * 1 2 3 24 24 H 1.09001 * 109.47106 * 179.10537 * 1 2 3 25 25 H 0.96998 * 121.14926 * 257.50619 * 4 2 1 26 26 H 1.08003 * 120.06123 * 0.30714 * 6 5 4 27 27 H 1.07996 * 119.96857 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.85351 * 179.91100 * 8 7 6 29 29 H 1.08004 * 119.97550 * 180.02562 * 9 8 7 30 30 H 0.96997 * 119.99869 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 7 2.0298 -0.7114 1.1889 5 6 1.9988 -2.1148 1.1709 6 6 2.1825 -2.8288 2.3444 7 6 2.1581 -4.2113 2.3204 8 6 1.9513 -4.8797 1.1280 9 6 1.7659 -4.1721 -0.0451 10 6 1.7877 -2.7857 -0.0306 11 8 1.5968 -2.0977 -1.1875 12 6 2.0517 -0.7430 -1.2385 13 1 3.1415 -0.7205 -1.2463 14 6 1.5239 -0.0800 -2.4847 15 1 0.8812 0.7844 -2.4056 16 6 1.8615 -0.5769 -3.7257 17 7 1.4005 0.0014 -4.8132 18 14 2.9726 -2.0724 -3.8624 19 1 2.1447 -3.3052 -3.8690 20 1 3.7546 -1.9945 -5.1224 21 1 3.9017 -2.1062 -2.7045 22 1 -0.3633 0.4998 0.8979 23 1 -0.3633 0.5276 -0.8819 24 1 -0.3633 -1.0275 -0.0160 25 1 2.3689 -0.2269 1.9578 26 1 2.3449 -2.3066 3.2757 27 1 2.3015 -4.7692 3.2339 28 1 1.9342 -5.9594 1.1129 29 1 1.6044 -4.6995 -0.9736 30 1 1.6383 -0.3480 -5.6863 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213112048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -7.025284 kcal Electronic energy + Delta-G solvation = -15019.148429 eV Core-core repulsion = 12586.520497 eV Total energy + Delta-G solvation = -2432.627932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.96764 -36.90884 -34.90234 -32.89432 -31.12732 -29.79348 -27.38424 -27.15534 -23.42465 -22.26536 -21.97190 -18.73368 -17.65261 -17.18088 -16.42377 -15.25655 -14.51705 -14.39481 -14.37301 -13.80917 -13.24303 -12.89098 -12.64209 -12.43822 -11.85005 -11.61098 -11.45116 -10.95941 -10.87630 -10.64682 -10.52602 -9.97786 -9.75848 -9.42110 -9.14043 -8.76935 -7.77265 -6.71534 -6.29440 -4.41577 1.93435 2.08445 3.33886 3.37527 3.48732 3.88928 4.26598 4.38556 4.48153 5.24406 5.28699 5.44788 5.59413 5.80036 5.86232 5.91509 5.93131 6.03080 6.39255 6.48144 6.57172 6.66504 6.79569 6.86156 6.95174 7.04031 7.22128 7.36682 7.73471 8.20783 8.25571 8.55197 8.73792 9.31580 10.78933 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.012205 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.242412 B = 2293.560849 C = 2893.597994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.128 3.872 3 H 0.089 0.911 4 N -0.755 5.755 5 C 0.137 3.863 6 C -0.167 4.167 7 C -0.129 4.129 8 C -0.143 4.143 9 C -0.132 4.132 10 C 0.079 3.921 11 O -0.315 6.315 12 C 0.172 3.828 13 H 0.036 0.964 14 C -0.515 4.515 15 H 0.091 0.909 16 C 0.089 3.911 17 N -0.879 5.879 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.296 1.296 21 H -0.268 1.268 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.394 0.606 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -4.341 11.286 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.107 0.893 4 N -0.388 5.388 5 C 0.035 3.965 6 C -0.190 4.190 7 C -0.148 4.148 8 C -0.163 4.163 9 C -0.151 4.151 10 C 0.029 3.971 11 O -0.230 6.230 12 C 0.118 3.882 13 H 0.054 0.946 14 C -0.552 4.552 15 H 0.109 0.891 16 C -0.118 4.118 17 N -0.514 5.514 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.223 1.223 21 H -0.193 1.193 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.229 0.771 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.515 -4.289 10.738 11.662 hybrid contribution 0.705 -0.446 0.316 0.892 sum 2.220 -4.735 11.054 12.229 Atomic orbital electron populations 1.22004 0.95181 1.02279 1.00999 1.21729 0.94643 0.96165 0.85202 0.89322 1.44988 1.71897 1.02033 1.19928 1.17974 1.00790 0.84606 0.93090 1.20360 1.08835 0.94158 0.95601 1.20613 1.03255 0.93463 0.97487 1.20603 1.04551 0.98910 0.92204 1.20457 1.04634 0.91199 0.98858 1.18877 1.00824 0.91656 0.85736 1.86504 1.76785 1.28967 1.30694 1.21070 0.94985 0.77440 0.94743 0.94649 1.20841 1.33592 1.13398 0.87345 0.89140 1.25055 0.94948 0.96286 0.95492 1.69898 1.43236 1.40152 0.98156 0.86424 0.80711 0.83352 0.76666 1.19616 1.22310 1.19305 0.94274 0.90424 0.92750 0.77093 0.86859 0.86926 0.86707 0.86069 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.99 37.16 0.33 -2.49 16 2 C 0.13 2.52 3.45 -67.21 -0.23 2.29 16 3 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 4 N -0.76 -13.33 5.59 -51.19 -0.29 -13.62 16 5 C 0.14 2.61 6.30 -83.44 -0.53 2.08 16 6 C -0.17 -2.69 9.93 -39.44 -0.39 -3.08 16 7 C -0.13 -1.95 10.05 -39.56 -0.40 -2.35 16 8 C -0.14 -2.29 10.03 -39.57 -0.40 -2.68 16 9 C -0.13 -2.53 9.97 -39.42 -0.39 -2.93 16 10 C 0.08 1.70 6.11 -39.06 -0.24 1.46 16 11 O -0.31 -7.73 7.16 -19.57 -0.14 -7.87 16 12 C 0.17 4.12 1.98 -27.59 -0.05 4.07 16 13 H 0.04 0.89 7.19 -51.93 -0.37 0.52 16 14 C -0.52 -13.95 8.69 -34.44 -0.30 -14.25 16 15 H 0.09 2.54 6.88 -52.49 -0.36 2.17 16 16 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 17 N -0.88 -25.80 13.96 55.43 0.77 -25.03 16 18 Si 0.90 22.71 26.23 -169.99 -4.46 18.25 16 19 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.27 -6.74 6.53 56.52 0.37 -6.37 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 1.58 6.64 -51.93 -0.34 1.24 16 24 H 0.05 1.14 7.25 -51.93 -0.38 0.76 16 25 H 0.39 5.67 8.91 -40.82 -0.36 5.31 16 26 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 248.36 15.07 3.74 3.74 Total: -1.00 -29.64 248.36 -6.58 -36.22 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.52 Total: 3.75 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.69 Total: -15.46 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.49 Total: -38.65 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.14 Total: -7.87 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.46 Total: 18.25 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.64 -6.58 -36.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds