Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.82304 * 2 1 4 4 N 1.47286 * 109.83474 * 120.89306 * 2 1 3 5 5 C 1.40387 * 117.70990 * 77.53108 * 4 2 1 6 6 C 1.38586 * 120.08669 * 193.70626 * 5 4 2 7 7 C 1.38284 * 119.87415 * 180.33163 * 6 5 4 8 8 C 1.38254 * 120.05827 * 0.02562 * 7 6 5 9 9 C 1.38243 * 120.29583 * 359.89927 * 8 7 6 10 10 C 1.38665 * 120.05431 * 0.04295 * 9 8 7 11 11 O 1.35946 * 119.66237 * 180.37954 * 10 9 8 12 12 C 1.42998 * 117.71767 * 200.26087 * 11 10 9 13 13 H 1.09003 * 109.74601 * 70.29211 * 12 11 10 14 14 C 1.50705 * 109.56436 * 190.65714 * 12 11 10 15 15 H 1.07999 * 119.99553 * 119.26301 * 14 12 11 16 16 C 1.37875 * 119.99825 * 299.26085 * 14 12 11 17 17 N 1.31514 * 119.99744 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 120.00206 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47188 * 89.99863 * 18 16 14 20 20 H 1.48499 * 109.47119 * 210.00100 * 18 16 14 21 21 H 1.48498 * 109.46951 * 330.00028 * 18 16 14 22 22 H 1.08993 * 109.47169 * 299.10225 * 1 2 3 23 23 H 1.09003 * 109.47149 * 59.10714 * 1 2 3 24 24 H 1.09001 * 109.47106 * 179.10537 * 1 2 3 25 25 H 0.96998 * 121.14926 * 257.50619 * 4 2 1 26 26 H 1.08003 * 120.06123 * 0.30714 * 6 5 4 27 27 H 1.07996 * 119.96857 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.85351 * 179.91100 * 8 7 6 29 29 H 1.08004 * 119.97550 * 180.02562 * 9 8 7 30 30 H 0.96997 * 119.99869 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 7 2.0298 -0.7114 1.1889 5 6 1.9988 -2.1148 1.1709 6 6 2.1825 -2.8288 2.3444 7 6 2.1581 -4.2113 2.3204 8 6 1.9513 -4.8797 1.1280 9 6 1.7659 -4.1721 -0.0451 10 6 1.7877 -2.7857 -0.0306 11 8 1.5968 -2.0977 -1.1875 12 6 2.0517 -0.7430 -1.2385 13 1 3.1415 -0.7205 -1.2463 14 6 1.5239 -0.0800 -2.4847 15 1 0.8812 0.7844 -2.4056 16 6 1.8615 -0.5769 -3.7257 17 7 1.4005 0.0014 -4.8132 18 14 2.9726 -2.0724 -3.8624 19 1 2.1447 -3.3052 -3.8690 20 1 3.7546 -1.9945 -5.1224 21 1 3.9017 -2.1062 -2.7045 22 1 -0.3633 0.4998 0.8979 23 1 -0.3633 0.5276 -0.8819 24 1 -0.3633 -1.0275 -0.0160 25 1 2.3689 -0.2269 1.9578 26 1 2.3449 -2.3066 3.2757 27 1 2.3015 -4.7692 3.2339 28 1 1.9342 -5.9594 1.1129 29 1 1.6044 -4.6995 -0.9736 30 1 1.6383 -0.3480 -5.6863 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213112048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -26.849647 kcal Electronic energy + Delta-G solvation = -15020.008078 eV Core-core repulsion = 12586.520497 eV Total energy + Delta-G solvation = -2433.487581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50280 -38.39314 -36.45653 -34.92556 -32.73424 -31.23233 -28.99402 -28.80148 -25.24073 -23.74722 -23.42015 -20.31010 -19.54210 -18.66553 -18.10306 -16.87712 -16.34347 -16.16106 -15.72814 -15.35000 -14.75677 -14.56319 -14.30947 -14.09700 -13.40662 -13.10536 -13.07095 -12.92274 -12.63591 -12.15589 -12.08489 -11.80659 -11.36432 -11.29755 -10.92633 -10.70942 -9.21320 -8.45904 -8.15053 -6.59300 0.57283 0.73041 1.28510 1.33451 1.44559 2.26174 2.41948 2.66345 3.02474 3.31868 3.89041 3.96233 4.23486 4.29494 4.34335 4.57443 4.61656 4.66309 4.83985 4.93604 4.98330 5.15610 5.27787 5.35118 5.42977 5.54469 5.73744 5.96019 6.10132 6.25566 6.51005 6.95315 7.01203 7.18961 8.66193 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033276 B = 0.012205 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.242412 B = 2293.560849 C = 2893.597994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.133 3.867 3 H 0.105 0.895 4 N -0.746 5.746 5 C 0.122 3.878 6 C -0.160 4.160 7 C -0.114 4.114 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.026 3.974 11 O -0.342 6.342 12 C 0.173 3.827 13 H 0.019 0.981 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.042 3.958 17 N -0.920 5.920 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.269 1.269 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.413 0.587 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.113 0.887 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -5.739 14.473 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 H 0.123 0.877 4 N -0.382 5.382 5 C 0.020 3.980 6 C -0.182 4.182 7 C -0.133 4.133 8 C -0.158 4.158 9 C -0.167 4.167 10 C -0.022 4.022 11 O -0.258 6.258 12 C 0.118 3.882 13 H 0.037 0.963 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.160 4.160 17 N -0.558 5.558 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.195 1.195 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.251 0.749 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.166 0.834 29 H 0.131 0.869 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.281 -5.693 13.960 15.248 hybrid contribution 0.449 -0.115 -0.501 0.682 sum 2.729 -5.808 13.459 14.911 Atomic orbital electron populations 1.21872 0.94961 1.00909 1.01616 1.21531 0.94778 0.96452 0.84534 0.87742 1.44762 1.71982 1.01749 1.19678 1.18198 1.01336 0.85136 0.93289 1.20799 1.06944 0.94834 0.95641 1.21167 1.00187 0.93319 0.98616 1.21001 1.02982 1.00555 0.91308 1.20678 1.05208 0.90675 1.00160 1.19279 1.04650 0.92605 0.85684 1.86319 1.77841 1.28775 1.32906 1.20793 0.93848 0.78190 0.95346 0.96329 1.21057 1.32396 1.13074 0.88833 0.91139 1.25710 0.96323 0.98468 0.95532 1.69982 1.45258 1.41892 0.98666 0.85612 0.79254 0.80461 0.76732 1.20259 1.21218 1.19453 0.91070 0.92372 0.94909 0.74906 0.83512 0.82620 0.83442 0.86898 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.99 71.98 0.65 -4.54 16 2 C 0.13 5.18 3.45 45.03 0.16 5.34 16 3 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 4 N -0.75 -24.71 5.59 -315.86 -1.77 -26.48 16 5 C 0.12 4.37 6.30 38.09 0.24 4.61 16 6 C -0.16 -4.43 9.93 22.36 0.22 -4.21 16 7 C -0.11 -2.85 10.05 22.28 0.22 -2.62 16 8 C -0.14 -3.93 10.03 22.27 0.22 -3.70 16 9 C -0.15 -5.52 9.97 22.37 0.22 -5.29 16 10 C 0.03 1.12 6.11 22.61 0.14 1.26 16 11 O -0.34 -17.16 7.16 -92.94 -0.67 -17.82 16 12 C 0.17 8.46 1.98 30.04 0.06 8.52 16 13 H 0.02 0.97 7.19 -2.39 -0.02 0.95 16 14 C -0.52 -28.98 8.69 25.60 0.22 -28.76 16 15 H 0.07 4.14 6.88 -2.91 -0.02 4.12 16 16 C 0.04 2.46 5.47 84.65 0.46 2.92 16 17 N -0.92 -55.89 13.96 21.45 0.30 -55.59 16 18 Si 0.95 48.28 26.23 68.60 1.80 50.08 16 19 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.27 -13.55 6.53 99.48 0.65 -12.90 16 22 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.06 2.42 6.64 -2.39 -0.02 2.41 16 24 H 0.03 1.37 7.25 -2.39 -0.02 1.35 16 25 H 0.41 10.51 8.91 -92.71 -0.83 9.69 16 26 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -66.28 248.36 2.75 -63.53 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.26 Total: 12.75 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 2.82 Total: -26.47 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.47 Total: -82.06 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.67 Total: -17.82 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.80 Total: 50.08 kcal Total: -66.28 2.75 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.676 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds