Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.82822 * 2 1 4 4 N 1.47299 * 109.89252 * 239.06438 * 2 1 3 5 5 C 1.40387 * 117.69251 * 282.48127 * 4 2 1 6 6 C 1.38589 * 120.07836 * 166.34150 * 5 4 2 7 7 C 1.38287 * 119.87234 * 179.67450 * 6 5 4 8 8 C 1.38250 * 120.05903 * 359.97438 * 7 6 5 9 9 C 1.38248 * 120.29328 * 0.07145 * 8 7 6 10 10 C 1.38651 * 120.05961 * 359.97438 * 9 8 7 11 11 O 1.35943 * 119.66266 * 179.82965 * 10 9 8 12 12 C 1.42955 * 117.76083 * 159.80828 * 11 10 9 13 13 H 1.08994 * 109.69008 * 169.26554 * 12 11 10 14 14 C 1.50702 * 109.58040 * 289.60538 * 12 11 10 15 15 H 1.07993 * 119.99769 * 119.32359 * 14 12 11 16 16 C 1.37874 * 119.99986 * 299.31673 * 14 12 11 17 17 N 1.31519 * 120.00182 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99983 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47122 * 60.00538 * 18 16 14 20 20 H 1.48500 * 109.47097 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47365 * 300.00061 * 18 16 14 22 22 H 1.09001 * 109.46748 * 300.00071 * 1 2 3 23 23 H 1.08998 * 109.46950 * 59.99950 * 1 2 3 24 24 H 1.09002 * 109.46941 * 180.02562 * 1 2 3 25 25 H 0.96997 * 121.15208 * 102.47416 * 4 2 1 26 26 H 1.07999 * 120.06299 * 359.69165 * 6 5 4 27 27 H 1.07995 * 119.96524 * 180.02562 * 7 6 5 28 28 H 1.07999 * 119.85567 * 180.09246 * 8 7 6 29 29 H 1.08005 * 119.96651 * 180.02562 * 9 8 7 30 30 H 0.96999 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8998 1.0254 0.0000 4 7 2.0312 -0.7120 -1.1881 5 6 2.0006 -2.1155 -1.1688 6 6 2.1866 -2.8305 -2.3413 7 6 2.1623 -4.2129 -2.3163 8 6 1.9534 -4.8803 -1.1237 9 6 1.7664 -4.1717 0.0485 10 6 1.7882 -2.7854 0.0331 11 8 1.5999 -2.0967 1.1899 12 6 2.0531 -0.7418 1.2395 13 1 1.6731 -0.2602 2.1404 14 6 3.5598 -0.7133 1.2487 15 1 4.0954 -0.2171 0.4530 16 6 4.2546 -1.3206 2.2732 17 7 3.6024 -1.9252 3.2421 18 14 6.1222 -1.2846 2.2850 19 1 6.5899 0.1243 2.3204 20 1 6.6235 -2.0033 3.4839 21 1 6.6378 -1.9468 1.0600 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.3706 -0.2280 -1.9571 26 1 2.3505 -2.3090 -3.2728 27 1 2.3075 -4.7716 -3.2290 28 1 1.9366 -5.9601 -1.1077 29 1 1.6040 -4.6985 0.9773 30 1 4.0911 -2.3528 3.9626 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213112116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -9.856878 kcal Electronic energy + Delta-G solvation = -15145.711175 eV Core-core repulsion = 12712.960456 eV Total energy + Delta-G solvation = -2432.750719 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59826 -36.52559 -34.52185 -32.59232 -30.85008 -29.32890 -27.39075 -26.68721 -23.18008 -22.21984 -21.76045 -18.63131 -17.20848 -16.77672 -15.98900 -14.88841 -14.70120 -14.12139 -13.70846 -13.51974 -12.94756 -12.83513 -12.47316 -11.98964 -11.84319 -11.57850 -11.10400 -10.96094 -10.80015 -10.60702 -10.53925 -10.11486 -9.58069 -9.10800 -8.78716 -8.63028 -7.37357 -6.32486 -6.09192 -4.26948 2.32095 2.48482 3.26442 3.31663 3.34518 4.21198 4.33945 4.62936 4.99383 5.36090 5.62035 5.68412 5.77528 5.92378 5.93973 6.12830 6.18481 6.31267 6.39545 6.53035 6.71773 6.85759 7.03658 7.15442 7.36592 7.39333 7.67987 7.75700 7.96123 8.12103 8.58036 8.71723 9.08955 9.47261 10.93945 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.013297 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.355349 B = 2105.181281 C = 2549.696492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.082 0.918 4 N -0.738 5.738 5 C 0.146 3.854 6 C -0.173 4.173 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.135 4.135 10 C 0.119 3.881 11 O -0.301 6.301 12 C 0.203 3.797 13 H 0.080 0.920 14 C -0.552 4.552 15 H 0.060 0.940 16 C 0.082 3.918 17 N -0.859 5.859 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.391 0.609 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 0.280 -7.101 7.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.100 0.900 4 N -0.370 5.370 5 C 0.044 3.956 6 C -0.196 4.196 7 C -0.157 4.157 8 C -0.166 4.166 9 C -0.154 4.154 10 C 0.069 3.931 11 O -0.214 6.214 12 C 0.149 3.851 13 H 0.098 0.902 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.225 0.775 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.788 0.214 -6.556 7.574 hybrid contribution 1.445 0.326 -0.411 1.537 sum -2.342 0.540 -6.966 7.370 Atomic orbital electron populations 1.22162 0.96844 1.02097 1.00621 1.21875 0.92251 0.96665 0.88113 0.89997 1.44477 1.71656 1.02008 1.18885 1.17872 1.00343 0.84379 0.93019 1.20268 1.09652 0.94098 0.95588 1.20488 1.04515 0.93464 0.97278 1.20514 1.05203 0.98513 0.92409 1.20342 1.05334 0.91402 0.98370 1.18479 0.98560 0.91169 0.84929 1.86221 1.75606 1.28614 1.30974 1.20548 0.94389 0.77699 0.92508 0.90206 1.21332 0.90717 1.37989 1.08914 0.92203 1.25028 0.98587 0.94043 0.94884 1.70014 1.35672 1.33055 1.10671 0.86666 0.85471 0.78253 0.77695 1.20082 1.21040 1.20055 0.92210 0.93602 0.92465 0.77499 0.87446 0.87503 0.87267 0.86401 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.30 37.16 0.35 -2.42 16 2 C 0.12 2.34 3.34 -67.16 -0.22 2.11 16 3 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 4 N -0.74 -14.45 5.17 -51.14 -0.26 -14.72 16 5 C 0.15 3.12 6.10 -83.44 -0.51 2.61 16 6 C -0.17 -3.26 9.93 -39.43 -0.39 -3.66 16 7 C -0.14 -2.47 10.05 -39.56 -0.40 -2.87 16 8 C -0.15 -2.74 10.03 -39.57 -0.40 -3.14 16 9 C -0.13 -2.94 9.97 -39.43 -0.39 -3.33 16 10 C 0.12 2.84 5.73 -39.06 -0.22 2.61 16 11 O -0.30 -7.83 8.96 -19.56 -0.18 -8.01 16 12 C 0.20 5.02 2.64 -27.55 -0.07 4.95 16 13 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 14 C -0.55 -14.93 7.80 -34.44 -0.27 -15.20 16 15 H 0.06 1.62 7.69 -52.49 -0.40 1.21 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -24.80 12.87 55.43 0.71 -24.08 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.10 7.27 -51.93 -0.38 0.72 16 25 H 0.39 6.58 8.91 -40.82 -0.36 6.21 16 26 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 255.13 15.07 3.84 3.84 Total: -1.00 -29.78 255.13 -7.19 -36.97 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.66 Total: 5.74 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.63 Total: -16.17 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.45 Total: -38.80 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.18 Total: -8.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.78 -7.19 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.116 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds