Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87344 * 2 1 4 4 N 1.47294 * 109.82969 * 239.07617 * 2 1 3 5 5 C 1.40388 * 117.70071 * 282.46650 * 4 2 1 6 6 C 1.38580 * 120.08177 * 166.17355 * 5 4 2 7 7 C 1.38281 * 119.87637 * 179.84450 * 6 5 4 8 8 C 1.38257 * 120.05514 * 359.97438 * 7 6 5 9 9 C 1.38239 * 120.29947 * 0.07908 * 8 7 6 10 10 C 1.38665 * 120.04865 * 0.02562 * 9 8 7 11 11 O 1.35939 * 119.65184 * 179.60729 * 10 9 8 12 12 C 1.42960 * 117.75024 * 159.94100 * 11 10 9 13 13 H 1.08995 * 109.69334 * 289.55997 * 12 11 10 14 14 C 1.50702 * 109.58233 * 169.22381 * 12 11 10 15 15 H 1.08002 * 120.00299 * 240.68457 * 14 12 11 16 16 C 1.37884 * 119.99942 * 60.40016 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09003 * 109.46793 * 299.06342 * 1 2 3 23 23 H 1.08998 * 109.47427 * 59.06809 * 1 2 3 24 24 H 1.09003 * 109.46862 * 179.07198 * 1 2 3 25 25 H 0.97003 * 121.15147 * 102.45347 * 4 2 1 26 26 H 1.08001 * 120.06738 * 359.86837 * 6 5 4 27 27 H 1.07999 * 119.97248 * 179.97438 * 7 6 5 28 28 H 1.08004 * 119.85060 * 180.10468 * 8 7 6 29 29 H 1.07996 * 119.97669 * 180.02562 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 7 2.0297 -0.7121 -1.1886 5 6 1.9987 -2.1155 -1.1697 6 6 2.1797 -2.8302 -2.3430 7 6 2.1515 -4.2125 -2.3189 8 6 1.9437 -4.8801 -1.1262 9 6 1.7614 -4.1719 0.0469 10 6 1.7859 -2.7856 0.0320 11 8 1.5978 -2.0971 1.1890 12 6 2.0511 -0.7422 1.2385 13 1 3.1407 -0.7195 1.2459 14 6 1.5237 -0.0784 2.4845 15 1 0.8808 0.7858 2.4052 16 6 1.8573 -0.5780 3.7256 17 7 2.6401 -1.6303 3.8222 18 14 1.1974 0.2402 5.2698 19 1 0.3454 1.3963 4.8920 20 1 0.3896 -0.7381 6.0417 21 1 2.3320 0.7124 6.1034 22 1 -0.3633 0.4992 0.8983 23 1 -0.3634 0.5282 -0.8815 24 1 -0.3633 -1.0276 -0.0166 25 1 2.3683 -0.2280 -1.9581 26 1 2.3429 -2.3086 -3.2746 27 1 2.2921 -4.7710 -3.2325 28 1 1.9240 -5.9599 -1.1109 29 1 1.5998 -4.6988 0.9757 30 1 2.8751 -1.9815 4.6954 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213112236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -10.711671 kcal Electronic energy + Delta-G solvation = -14920.409768 eV Core-core repulsion = 12487.621982 eV Total energy + Delta-G solvation = -2432.787786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67617 -36.63896 -34.61477 -32.86761 -30.91385 -29.46801 -27.20930 -26.68761 -23.51444 -22.11861 -21.84624 -18.68365 -17.26627 -16.98744 -15.99408 -14.92155 -14.74658 -14.15934 -14.10161 -13.63044 -13.02651 -12.85382 -12.37480 -12.26930 -11.51981 -11.45385 -11.26110 -11.01992 -10.82029 -10.63912 -10.31652 -10.18562 -9.69835 -9.23592 -8.89342 -8.66693 -7.49333 -6.48114 -6.19041 -4.35294 2.15766 2.30815 3.21442 3.29975 3.32709 4.06262 4.29307 4.54033 4.77664 5.35770 5.46386 5.63605 5.75679 5.98167 6.01943 6.05962 6.12184 6.22172 6.53750 6.63977 6.71229 6.87578 6.97720 7.11670 7.19276 7.25438 7.47011 7.71224 7.80908 8.07911 8.42224 8.64319 9.08774 9.37397 10.87828 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040813 B = 0.009715 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.886891 B = 2881.524174 C = 3349.887138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.116 3.884 3 H 0.083 0.917 4 N -0.756 5.756 5 C 0.127 3.873 6 C -0.167 4.167 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.133 4.133 10 C 0.090 3.910 11 O -0.286 6.286 12 C 0.212 3.788 13 H 0.032 0.968 14 C -0.530 4.530 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.853 5.853 18 Si 0.898 3.102 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.391 0.609 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -0.434 -8.111 8.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.101 0.899 4 N -0.389 5.389 5 C 0.026 3.974 6 C -0.190 4.190 7 C -0.157 4.157 8 C -0.162 4.162 9 C -0.152 4.152 10 C 0.039 3.961 11 O -0.199 6.199 12 C 0.157 3.843 13 H 0.050 0.950 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.129 4.129 17 N -0.488 5.488 18 Si 0.725 3.275 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.226 0.774 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.329 -0.526 -7.630 7.762 hybrid contribution -0.052 0.626 0.316 0.703 sum -1.381 0.100 -7.314 7.444 Atomic orbital electron populations 1.22000 0.95733 1.01983 1.00673 1.21923 0.94285 0.96279 0.86392 0.89911 1.44918 1.72182 1.02097 1.19750 1.18010 1.01600 0.84499 0.93271 1.20308 1.09072 0.94139 0.95497 1.20543 1.04349 0.93447 0.97387 1.20584 1.04563 0.98714 0.92310 1.20418 1.04881 0.91325 0.98610 1.18996 0.99255 0.91884 0.85944 1.86648 1.75556 1.28475 1.29215 1.20467 0.94801 0.77040 0.91981 0.95016 1.20969 1.33603 1.13117 0.89032 0.90785 1.25133 0.93841 0.94311 0.99572 1.70054 1.32699 1.21391 1.24613 0.86447 0.78946 0.79505 0.82593 1.19389 1.20624 1.20709 0.90849 0.94528 0.92822 0.77440 0.87244 0.87263 0.87009 0.86041 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.01 37.16 0.33 -2.52 16 2 C 0.12 2.40 3.45 -67.23 -0.23 2.17 16 3 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 4 N -0.76 -14.30 5.59 -51.21 -0.29 -14.59 16 5 C 0.13 2.61 6.28 -83.44 -0.52 2.09 16 6 C -0.17 -2.94 9.93 -39.44 -0.39 -3.33 16 7 C -0.14 -2.29 10.05 -39.56 -0.40 -2.69 16 8 C -0.14 -2.48 10.03 -39.57 -0.40 -2.88 16 9 C -0.13 -2.77 9.97 -39.42 -0.39 -3.16 16 10 C 0.09 2.09 6.11 -39.06 -0.24 1.85 16 11 O -0.29 -7.61 8.85 -19.55 -0.17 -7.78 16 12 C 0.21 5.39 2.51 -27.62 -0.07 5.32 16 13 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.53 -14.08 8.09 -34.44 -0.28 -14.36 16 15 H 0.07 1.86 6.63 -52.49 -0.35 1.52 16 16 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 17 N -0.85 -24.54 12.87 55.43 0.71 -23.83 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.07 1.46 6.58 -51.93 -0.34 1.12 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.15 7.26 -51.93 -0.38 0.78 16 25 H 0.39 6.13 8.91 -40.82 -0.36 5.77 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 253.35 15.07 3.82 3.82 Total: -1.00 -29.38 253.35 -7.16 -36.54 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.52 Total: 5.82 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.68 Total: -15.45 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.17 Total: -7.78 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.38 -7.16 -36.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.827 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds