Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87344 * 2 1 4 4 N 1.47294 * 109.82969 * 239.07617 * 2 1 3 5 5 C 1.40388 * 117.70071 * 282.46650 * 4 2 1 6 6 C 1.38580 * 120.08177 * 166.17355 * 5 4 2 7 7 C 1.38281 * 119.87637 * 179.84450 * 6 5 4 8 8 C 1.38257 * 120.05514 * 359.97438 * 7 6 5 9 9 C 1.38239 * 120.29947 * 0.07908 * 8 7 6 10 10 C 1.38665 * 120.04865 * 0.02562 * 9 8 7 11 11 O 1.35939 * 119.65184 * 179.60729 * 10 9 8 12 12 C 1.42960 * 117.75024 * 159.94100 * 11 10 9 13 13 H 1.08995 * 109.69334 * 289.55997 * 12 11 10 14 14 C 1.50702 * 109.58233 * 169.22381 * 12 11 10 15 15 H 1.08002 * 120.00299 * 240.68457 * 14 12 11 16 16 C 1.37884 * 119.99942 * 60.40016 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09003 * 109.46793 * 299.06342 * 1 2 3 23 23 H 1.08998 * 109.47427 * 59.06809 * 1 2 3 24 24 H 1.09003 * 109.46862 * 179.07198 * 1 2 3 25 25 H 0.97003 * 121.15147 * 102.45347 * 4 2 1 26 26 H 1.08001 * 120.06738 * 359.86837 * 6 5 4 27 27 H 1.07999 * 119.97248 * 179.97438 * 7 6 5 28 28 H 1.08004 * 119.85060 * 180.10468 * 8 7 6 29 29 H 1.07996 * 119.97669 * 180.02562 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 7 2.0297 -0.7121 -1.1886 5 6 1.9987 -2.1155 -1.1697 6 6 2.1797 -2.8302 -2.3430 7 6 2.1515 -4.2125 -2.3189 8 6 1.9437 -4.8801 -1.1262 9 6 1.7614 -4.1719 0.0469 10 6 1.7859 -2.7856 0.0320 11 8 1.5978 -2.0971 1.1890 12 6 2.0511 -0.7422 1.2385 13 1 3.1407 -0.7195 1.2459 14 6 1.5237 -0.0784 2.4845 15 1 0.8808 0.7858 2.4052 16 6 1.8573 -0.5780 3.7256 17 7 2.6401 -1.6303 3.8222 18 14 1.1974 0.2402 5.2698 19 1 0.3454 1.3963 4.8920 20 1 0.3896 -0.7381 6.0417 21 1 2.3320 0.7124 6.1034 22 1 -0.3633 0.4992 0.8983 23 1 -0.3634 0.5282 -0.8815 24 1 -0.3633 -1.0276 -0.0166 25 1 2.3683 -0.2280 -1.9581 26 1 2.3429 -2.3086 -3.2746 27 1 2.2921 -4.7710 -3.2325 28 1 1.9240 -5.9599 -1.1109 29 1 1.5998 -4.6988 0.9757 30 1 2.8751 -1.9815 4.6954 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213112236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -29.933283 kcal Electronic energy + Delta-G solvation = -14921.243279 eV Core-core repulsion = 12487.621982 eV Total energy + Delta-G solvation = -2433.621297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31000 -38.23836 -36.27968 -34.83851 -32.56617 -31.02514 -28.74657 -28.57074 -25.40008 -23.71329 -23.37613 -20.33198 -19.12131 -18.55807 -17.79807 -16.66870 -16.49838 -15.89582 -15.63870 -15.20284 -14.65932 -14.50189 -14.01818 -13.97275 -13.17314 -13.03271 -12.90648 -12.82911 -12.52549 -12.26233 -12.05225 -11.82306 -11.23395 -11.16438 -10.72727 -10.53750 -9.07939 -8.25273 -8.03492 -6.46810 0.65282 0.81428 1.40660 1.42374 1.55067 2.35165 2.56886 2.86840 3.10615 3.49023 3.99283 4.06385 4.33958 4.36128 4.41255 4.63223 4.68917 4.72651 4.96649 5.04843 5.10604 5.25498 5.36138 5.48429 5.57107 5.65855 5.79246 5.91000 6.11385 6.35172 6.63328 7.06478 7.24165 7.36441 8.85037 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040813 B = 0.009715 C = 0.008356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.886891 B = 2881.524174 C = 3349.887138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.123 3.877 3 H 0.101 0.899 4 N -0.749 5.749 5 C 0.113 3.887 6 C -0.161 4.161 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.151 4.151 10 C 0.035 3.965 11 O -0.322 6.322 12 C 0.209 3.791 13 H -0.015 1.015 14 C -0.543 4.543 15 H 0.086 0.914 16 C 0.022 3.978 17 N -0.899 5.899 18 Si 0.970 3.030 19 H -0.254 1.254 20 H -0.283 1.283 21 H -0.276 1.276 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.027 0.973 25 H 0.410 0.590 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -0.180 -10.349 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.017 3.983 3 H 0.119 0.881 4 N -0.384 5.384 5 C 0.012 3.988 6 C -0.184 4.184 7 C -0.141 4.141 8 C -0.158 4.158 9 C -0.171 4.171 10 C -0.014 4.014 11 O -0.236 6.236 12 C 0.154 3.846 13 H 0.003 0.997 14 C -0.580 4.580 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.535 5.535 18 Si 0.794 3.206 19 H -0.177 1.177 20 H -0.209 1.209 21 H -0.201 1.201 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.247 0.753 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.163 0.837 29 H 0.125 0.875 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.914 -0.261 -9.909 10.095 hybrid contribution 0.177 0.414 0.858 0.969 sum -1.737 0.154 -9.050 9.217 Atomic orbital electron populations 1.21872 0.94753 1.00668 1.01875 1.21737 0.94953 0.96399 0.85164 0.88119 1.44744 1.72270 1.01732 1.19701 1.18224 1.02028 0.85225 0.93367 1.20764 1.07189 0.94838 0.95565 1.21109 1.01158 0.93321 0.98504 1.20968 1.03079 1.00365 0.91362 1.20615 1.05794 0.90924 0.99773 1.19440 1.02958 0.92878 0.86171 1.86511 1.76607 1.28905 1.31617 1.20264 0.92270 0.77870 0.94242 0.99729 1.21396 1.33199 1.13524 0.89913 0.89653 1.26087 0.94020 0.94844 1.03163 1.70213 1.34697 1.23414 1.25213 0.85337 0.78398 0.78679 0.78205 1.17716 1.20880 1.20125 0.91529 0.91201 0.95372 0.75309 0.83716 0.82716 0.83671 0.87491 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.01 71.98 0.65 -4.50 16 2 C 0.12 5.09 3.45 45.01 0.16 5.25 16 3 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 4 N -0.75 -27.52 5.59 -315.95 -1.77 -29.28 16 5 C 0.11 4.54 6.28 38.09 0.24 4.77 16 6 C -0.16 -5.11 9.93 22.36 0.22 -4.88 16 7 C -0.12 -3.53 10.05 22.28 0.22 -3.30 16 8 C -0.14 -4.51 10.03 22.27 0.22 -4.29 16 9 C -0.15 -6.45 9.97 22.37 0.22 -6.23 16 10 C 0.04 1.68 6.11 22.61 0.14 1.82 16 11 O -0.32 -18.11 8.85 -92.86 -0.82 -18.93 16 12 C 0.21 11.10 2.51 30.02 0.08 11.18 16 13 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 14 C -0.54 -29.77 8.09 25.60 0.21 -29.56 16 15 H 0.09 4.33 6.63 -2.91 -0.02 4.31 16 16 C 0.02 1.24 5.40 84.66 0.46 1.70 16 17 N -0.90 -54.40 12.87 21.45 0.28 -54.12 16 18 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 19 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.07 2.62 6.58 -2.39 -0.02 2.61 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.03 1.20 7.26 -2.39 -0.02 1.19 16 25 H 0.41 11.85 8.91 -92.71 -0.83 11.03 16 26 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 27 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 30 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -67.63 253.35 2.85 -64.78 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.32 Total: 20.60 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 2.81 Total: -28.06 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.49 Total: -83.41 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.82 Total: -18.93 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.63 2.85 -64.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213112236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.846 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds