Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99526 * 2 1 4 4 H 1.48497 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47437 * 300.00176 * 3 2 1 6 6 H 1.48508 * 109.47042 * 60.00361 * 3 2 1 7 7 C 1.37868 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00192 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.45807 * 60.02328 * 9 7 2 11 11 C 1.53031 * 109.46193 * 300.05580 * 9 7 2 12 12 C 1.53124 * 109.30878 * 180.82019 * 11 9 7 13 13 C 1.53118 * 109.15709 * 57.59842 * 12 11 9 14 14 C 1.53042 * 109.31078 * 302.40048 * 13 12 11 15 15 N 1.46850 * 109.46178 * 180.02562 * 9 7 2 16 16 C 1.46901 * 110.99936 * 305.85583 * 15 9 7 17 17 C 1.53005 * 109.46734 * 158.99444 * 16 15 9 18 18 F 1.39898 * 109.47336 * 305.79199 * 17 16 15 19 19 F 1.39903 * 109.46732 * 65.79073 * 17 16 15 20 20 H 0.97001 * 120.00309 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.50487 * 300.74108 * 11 9 7 22 22 H 1.09005 * 109.50265 * 60.82632 * 11 9 7 23 23 H 1.09001 * 109.49416 * 297.71012 * 12 11 9 24 24 H 1.09001 * 109.55850 * 177.51947 * 12 11 9 25 25 H 1.09004 * 109.50785 * 182.44145 * 13 12 11 26 26 H 1.09000 * 109.50783 * 62.36177 * 13 12 11 27 27 H 1.09000 * 109.46517 * 179.17232 * 14 13 12 28 28 H 1.08997 * 109.46022 * 299.14723 * 14 13 12 29 29 H 1.09000 * 109.46838 * 278.99268 * 16 15 9 30 30 H 1.08996 * 109.47173 * 38.99794 * 16 15 9 31 31 H 1.08996 * 109.46966 * 185.78991 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6246 -2.5567 -0.8906 11 6 0.3709 -2.5797 1.2487 12 6 -0.3773 -3.9157 1.2555 13 6 0.6382 -5.0606 1.2047 14 6 1.5108 -4.9081 -0.0433 15 7 2.2057 -3.6151 -0.0005 16 6 3.1584 -3.4929 -1.1121 17 6 4.4100 -4.3173 -0.8039 18 9 4.9276 -3.9329 0.4377 19 9 4.0769 -5.6757 -0.7699 20 1 -0.4850 0.8400 -0.0004 21 1 0.9954 -2.5085 2.1391 22 1 -0.3474 -1.7598 1.2412 23 1 -1.0318 -3.9705 0.3856 24 1 -0.9718 -3.9963 2.1655 25 1 0.1107 -6.0136 1.1656 26 1 1.2671 -5.0291 2.0945 27 1 2.2444 -5.7137 -0.0742 28 1 0.8831 -4.9543 -0.9331 29 1 2.6970 -3.8616 -2.0282 30 1 3.4351 -2.4465 -1.2402 31 1 5.1578 -4.1457 -1.5781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213335625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = -109.466833 kcal Electronic energy + Delta-G solvation = -15925.393798 eV Core-core repulsion = 13069.927232 eV Total energy + Delta-G solvation = -2855.466566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.36372 -46.34739 -38.00661 -33.02153 -32.93941 -29.47411 -28.33363 -25.22965 -23.17975 -21.57391 -20.81216 -18.69445 -17.10388 -16.80028 -16.21844 -15.60965 -14.96830 -14.19022 -13.85768 -13.47790 -13.08275 -13.05386 -12.72225 -12.50005 -12.26922 -11.87420 -11.59473 -11.08027 -10.98884 -10.71773 -10.64397 -10.37473 -10.12358 -10.01832 -9.60166 -9.10552 -8.78576 -8.43494 -7.25844 -6.05596 -4.11108 3.26803 3.35420 3.39390 4.34268 4.39239 4.73996 4.89462 5.16320 5.25980 5.52559 5.72493 5.74620 5.95611 6.11873 6.26085 6.34867 6.46136 6.49106 6.63911 6.84225 6.90434 7.09426 7.24696 7.54177 7.67956 7.78482 8.12468 8.28667 8.54481 8.95236 9.54177 11.00455 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.012096 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.534186 B = 2314.197009 C = 3113.774521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.219 3.781 10 H 0.000 1.000 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.110 4.110 14 C 0.043 3.957 15 N -0.526 5.526 16 C 0.005 3.995 17 C 0.266 3.734 18 F -0.197 7.197 19 F -0.215 7.215 20 H 0.261 0.739 21 H 0.044 0.956 22 H 0.094 0.906 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.048 0.952 30 H 0.121 0.879 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -7.130 -1.896 8.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.114 3.886 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.148 4.148 14 C -0.086 4.086 15 N -0.251 5.251 16 C -0.125 4.125 17 C 0.212 3.788 18 F -0.179 7.179 19 F -0.197 7.197 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.286 -6.996 -1.424 8.327 hybrid contribution -0.093 0.771 -0.652 1.014 sum 4.193 -6.225 -2.076 7.787 Atomic orbital electron populations 1.69899 1.05912 1.26499 1.50571 1.24933 0.94873 0.99164 0.95055 0.86480 0.80140 0.83504 0.77539 1.19657 1.21152 1.20964 1.21219 0.93290 0.89799 1.50542 0.91664 1.19239 0.88822 0.86916 0.93654 0.98265 1.21629 0.98973 0.95061 0.98600 1.21697 0.97416 0.97173 0.99796 1.21520 0.97391 0.97468 0.98404 1.22349 0.96545 0.93152 0.96523 1.61963 1.19314 1.02858 1.41007 1.23174 0.92638 1.02661 0.93987 1.22165 0.96726 0.76385 0.83561 1.92969 1.87872 1.90758 1.46261 1.92846 1.93620 1.36265 1.96919 0.92949 0.93762 0.88786 0.93448 0.93708 0.93258 0.91874 0.90665 0.96303 0.93394 0.86146 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.33 55.43 0.63 -24.21 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.59 7.63 -34.44 -0.26 -13.85 16 8 H 0.07 1.73 6.47 -52.48 -0.34 1.39 16 9 C 0.22 5.46 1.83 -68.87 -0.13 5.34 16 10 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 11 C -0.10 -2.52 5.13 -26.65 -0.14 -2.65 16 12 C -0.12 -2.48 6.00 -26.61 -0.16 -2.64 16 13 C -0.11 -2.03 6.09 -26.65 -0.16 -2.20 16 14 C 0.04 0.83 5.23 -3.83 -0.02 0.81 16 15 N -0.53 -11.47 4.23 -228.07 -0.97 -12.43 16 16 C 0.01 0.09 5.15 -3.82 -0.02 0.07 16 17 C 0.27 4.30 5.59 37.16 0.21 4.51 16 18 F -0.20 -3.76 17.15 2.25 0.04 -3.72 16 19 F -0.21 -3.59 14.68 2.25 0.03 -3.56 16 20 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 21 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.09 2.49 6.09 -51.93 -0.32 2.18 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.38 5.46 -51.93 -0.28 1.10 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.84 7.98 -51.93 -0.41 0.42 16 30 H 0.12 2.40 5.64 -51.93 -0.29 2.11 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -28.39 251.31 -6.44 -34.83 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.16 Total: -1.48 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.77 Total: -9.06 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.34 Total: -36.64 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.07 Total: -7.28 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.39 -6.44 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213335625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.639 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds