Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48496 * 109.46974 * 90.00302 * 3 2 1 5 5 H 1.48506 * 109.46939 * 210.00221 * 3 2 1 6 6 H 1.48496 * 109.47310 * 330.00410 * 3 2 1 7 7 C 1.37877 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00083 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99759 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.32751 * 302.24719 * 9 7 2 11 11 C 1.54901 * 110.37719 * 64.62088 * 9 7 2 12 12 C 1.55136 * 101.65520 * 155.89851 * 11 9 7 13 13 C 1.54318 * 103.01773 * 324.35122 * 12 11 9 14 14 N 1.47438 * 107.23804 * 22.27679 * 13 12 11 15 15 C 1.46901 * 111.00217 * 123.25684 * 14 13 12 16 16 C 1.53001 * 109.46747 * 55.41913 * 15 14 13 17 17 C 1.52996 * 109.47189 * 174.67658 * 16 15 14 18 18 F 1.39902 * 109.47166 * 175.00233 * 17 16 15 19 19 F 1.39900 * 109.47196 * 295.00068 * 17 16 15 20 20 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.08999 * 110.99062 * 273.99154 * 11 9 7 22 22 H 1.09004 * 110.98777 * 37.80448 * 11 9 7 23 23 H 1.09001 * 110.71105 * 205.96363 * 12 11 9 24 24 H 1.09007 * 110.85318 * 82.79629 * 12 11 9 25 25 H 1.09003 * 109.88785 * 262.87302 * 13 12 11 26 26 H 1.08996 * 109.88907 * 141.69142 * 13 12 11 27 27 H 1.08999 * 109.47496 * 175.42027 * 15 14 13 28 28 H 1.09003 * 109.47383 * 295.42248 * 15 14 13 29 29 H 1.08999 * 109.47391 * 294.68047 * 16 15 14 30 30 H 1.09006 * 109.47212 * 54.67719 * 16 15 14 31 31 H 1.09004 * 109.46979 * 55.00498 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8906 -0.6481 -0.8639 11 6 4.0505 -0.5725 1.3126 12 6 5.4597 -1.2141 1.4078 13 6 5.2349 -2.6323 0.8423 14 7 4.0263 -2.5800 -0.0006 15 6 4.3177 -3.0326 -1.3674 16 6 4.9341 -4.4322 -1.3206 17 6 5.1151 -4.9578 -2.7460 18 9 5.7818 -6.1871 -2.7086 19 9 3.8614 -5.1252 -3.3440 20 1 -0.4850 0.8401 0.0004 21 1 4.1200 0.5122 1.2312 22 1 3.4323 -0.8598 2.1632 23 1 5.7928 -1.2609 2.4446 24 1 6.1778 -0.6656 0.7981 25 1 5.0866 -3.3381 1.6596 26 1 6.0934 -2.9323 0.2415 27 1 3.3940 -3.0615 -1.9454 28 1 5.0187 -2.3425 -1.8370 29 1 5.9036 -4.3859 -0.8245 30 1 4.2747 -5.1013 -0.7676 31 1 5.7013 -4.2439 -3.3247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213336665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -103.892648 kcal Electronic energy + Delta-G solvation = -15292.915721 eV Core-core repulsion = 12437.690870 eV Total energy + Delta-G solvation = -2855.224851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.81805 -46.82527 -38.47547 -33.78134 -32.40447 -29.71024 -28.93949 -24.83777 -24.02290 -21.93671 -20.16662 -19.39419 -17.42026 -17.15479 -16.84188 -16.17544 -15.12165 -14.98011 -13.99182 -13.93682 -13.54714 -13.21626 -13.15555 -12.80055 -12.57702 -12.12130 -11.88711 -11.55579 -11.17276 -10.96475 -10.76111 -10.54554 -10.49326 -10.15917 -9.95245 -9.75556 -9.17286 -8.55508 -7.45631 -6.06060 -4.03509 3.24817 3.32469 3.34752 3.87850 4.28603 4.38947 4.65563 4.73102 4.93151 5.16532 5.30693 5.40402 5.45279 5.53760 5.68496 5.82638 6.01810 6.16777 6.23504 6.27363 6.39184 6.51422 6.67443 6.70858 7.13342 7.63424 7.79116 7.92942 8.64890 9.06316 9.56011 11.07307 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.008331 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.781150 B = 3360.066401 C = 3888.838997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.292 1.292 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.179 3.821 10 H 0.013 0.987 11 C -0.134 4.134 12 C -0.146 4.146 13 C 0.039 3.961 14 N -0.512 5.512 15 C 0.058 3.942 16 C -0.171 4.171 17 C 0.263 3.737 18 F -0.213 7.213 19 F -0.203 7.203 20 H 0.264 0.736 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.732 -5.157 -2.289 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.219 1.219 7 C -0.533 4.533 8 H 0.101 0.899 9 C 0.072 3.928 10 H 0.031 0.969 11 C -0.173 4.173 12 C -0.184 4.184 13 C -0.089 4.089 14 N -0.236 5.236 15 C -0.071 4.071 16 C -0.209 4.209 17 C 0.209 3.791 18 F -0.194 7.194 19 F -0.184 7.184 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.166 -5.408 -2.110 13.480 hybrid contribution 1.013 1.437 -0.329 1.789 sum 13.179 -3.972 -2.439 13.979 Atomic orbital electron populations 1.69882 1.06067 1.26762 1.51062 1.24886 0.94660 0.98569 0.94980 0.87016 0.79967 0.84356 0.78392 1.20266 1.19390 1.21858 1.20905 0.87910 0.94736 1.49738 0.89902 1.20646 0.96723 0.83134 0.92315 0.96906 1.23120 0.94184 0.98376 1.01601 1.22800 0.98485 0.96804 1.00358 1.22849 0.91952 0.96758 0.97321 1.63560 1.25648 1.26277 1.08100 1.22072 1.00240 0.92126 0.92632 1.22804 1.04114 1.00018 0.93984 1.21907 0.78462 0.82471 0.96284 1.92958 1.80777 1.48133 1.97534 1.93001 1.43922 1.96062 1.85444 0.92639 0.92924 0.90398 0.91857 0.92647 0.91300 0.93827 0.89335 0.95486 0.89254 0.88523 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.87 21.33 24.62 -169.99 -4.18 17.15 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.27 6.47 56.52 0.37 -5.91 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.49 -13.85 9.41 -34.44 -0.32 -14.17 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.18 4.16 1.88 -67.34 -0.13 4.03 16 10 H 0.01 0.32 6.65 -51.93 -0.35 -0.03 16 11 C -0.13 -2.83 5.39 -24.60 -0.13 -2.96 16 12 C -0.15 -2.43 6.94 -24.91 -0.17 -2.60 16 13 C 0.04 0.65 6.19 -2.84 -0.02 0.63 16 14 N -0.51 -10.27 4.91 -224.75 -1.10 -11.37 16 15 C 0.06 0.99 4.77 -3.82 -0.02 0.97 16 16 C -0.17 -2.31 5.11 -26.73 -0.14 -2.45 16 17 C 0.26 3.27 5.29 37.16 0.20 3.46 16 18 F -0.21 -2.81 17.34 2.25 0.04 -2.77 16 19 F -0.20 -3.08 16.93 2.25 0.04 -3.04 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H 0.05 1.11 5.29 -51.93 -0.27 0.84 16 22 H 0.08 1.71 8.05 -51.93 -0.42 1.30 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.61 6.03 -51.93 -0.31 0.29 16 27 H 0.09 1.69 7.81 -51.93 -0.41 1.29 16 28 H 0.03 0.43 8.00 -51.93 -0.42 0.01 16 29 H 0.09 1.05 6.42 -51.93 -0.33 0.72 16 30 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -30.24 254.21 -5.65 -35.88 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.21 Total: -1.88 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.83 Total: -11.16 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.33 Total: -38.01 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.08 Total: -5.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.18 Total: 17.15 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.24 -5.65 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213336665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.009 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds