Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48496 * 109.46974 * 90.00302 * 3 2 1 5 5 H 1.48506 * 109.46939 * 210.00221 * 3 2 1 6 6 H 1.48496 * 109.47310 * 330.00410 * 3 2 1 7 7 C 1.37877 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00083 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99759 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.32751 * 302.24719 * 9 7 2 11 11 C 1.54901 * 110.37719 * 64.62088 * 9 7 2 12 12 C 1.55136 * 101.65520 * 155.89851 * 11 9 7 13 13 C 1.54318 * 103.01773 * 324.35122 * 12 11 9 14 14 N 1.47438 * 107.23804 * 22.27679 * 13 12 11 15 15 C 1.46901 * 111.00217 * 123.25684 * 14 13 12 16 16 C 1.53001 * 109.46747 * 55.41913 * 15 14 13 17 17 C 1.52996 * 109.47189 * 174.67658 * 16 15 14 18 18 F 1.39902 * 109.47166 * 175.00233 * 17 16 15 19 19 F 1.39900 * 109.47196 * 295.00068 * 17 16 15 20 20 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.08999 * 110.99062 * 273.99154 * 11 9 7 22 22 H 1.09004 * 110.98777 * 37.80448 * 11 9 7 23 23 H 1.09001 * 110.71105 * 205.96363 * 12 11 9 24 24 H 1.09007 * 110.85318 * 82.79629 * 12 11 9 25 25 H 1.09003 * 109.88785 * 262.87302 * 13 12 11 26 26 H 1.08996 * 109.88907 * 141.69142 * 13 12 11 27 27 H 1.08999 * 109.47496 * 175.42027 * 15 14 13 28 28 H 1.09003 * 109.47383 * 295.42248 * 15 14 13 29 29 H 1.08999 * 109.47391 * 294.68047 * 16 15 14 30 30 H 1.09006 * 109.47212 * 54.67719 * 16 15 14 31 31 H 1.09004 * 109.46979 * 55.00498 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8906 -0.6481 -0.8639 11 6 4.0505 -0.5725 1.3126 12 6 5.4597 -1.2141 1.4078 13 6 5.2349 -2.6323 0.8423 14 7 4.0263 -2.5800 -0.0006 15 6 4.3177 -3.0326 -1.3674 16 6 4.9341 -4.4322 -1.3206 17 6 5.1151 -4.9578 -2.7460 18 9 5.7818 -6.1871 -2.7086 19 9 3.8614 -5.1252 -3.3440 20 1 -0.4850 0.8401 0.0004 21 1 4.1200 0.5122 1.2312 22 1 3.4323 -0.8598 2.1632 23 1 5.7928 -1.2609 2.4446 24 1 6.1778 -0.6656 0.7981 25 1 5.0866 -3.3381 1.6596 26 1 6.0934 -2.9323 0.2415 27 1 3.3940 -3.0615 -1.9454 28 1 5.0187 -2.3425 -1.8370 29 1 5.9036 -4.3859 -0.8245 30 1 4.2747 -5.1013 -0.7676 31 1 5.7013 -4.2439 -3.3247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213336665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -125.244268 kcal Electronic energy + Delta-G solvation = -15293.841597 eV Core-core repulsion = 12437.690870 eV Total energy + Delta-G solvation = -2856.150727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.87065 -47.89546 -39.98098 -35.26638 -34.35146 -31.10547 -30.63830 -26.38429 -25.59636 -23.17186 -21.75209 -20.90207 -18.95169 -18.44234 -18.20360 -17.39618 -16.71063 -16.43984 -15.67554 -15.23540 -14.95567 -14.71345 -14.41608 -14.26667 -13.92513 -13.59537 -13.31095 -13.10735 -12.74620 -12.50404 -12.29883 -11.96410 -11.84867 -11.71061 -11.51044 -11.48143 -11.17407 -10.70569 -8.96836 -8.27002 -6.29476 1.31003 1.34216 1.43912 2.32907 2.77758 3.05969 3.27120 3.56828 3.62009 3.71882 3.93661 4.11287 4.21728 4.33842 4.39016 4.55272 4.63998 4.77690 4.81129 5.00324 5.01913 5.08439 5.10468 5.25807 5.51394 5.67497 5.99434 6.46598 6.62713 6.76965 7.34714 8.90706 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034399 B = 0.008331 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.781150 B = 3360.066401 C = 3888.838997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.246 1.246 6 H -0.293 1.293 7 C -0.500 4.500 8 H 0.029 0.971 9 C 0.179 3.821 10 H 0.011 0.989 11 C -0.138 4.138 12 C -0.134 4.134 13 C 0.038 3.962 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.159 4.159 17 C 0.262 3.738 18 F -0.215 7.215 19 F -0.224 7.224 20 H 0.265 0.735 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.288 -4.484 -2.171 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.169 1.169 6 H -0.220 1.220 7 C -0.539 4.539 8 H 0.047 0.953 9 C 0.071 3.929 10 H 0.028 0.972 11 C -0.177 4.177 12 C -0.172 4.172 13 C -0.089 4.089 14 N -0.265 5.265 15 C -0.070 4.070 16 C -0.197 4.197 17 C 0.208 3.792 18 F -0.197 7.197 19 F -0.205 7.205 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.137 0.863 30 H 0.097 0.903 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.753 -4.765 -1.988 16.578 hybrid contribution -0.159 1.096 -0.365 1.166 sum 15.594 -3.669 -2.352 16.192 Atomic orbital electron populations 1.70060 1.08242 1.27905 1.53165 1.25802 0.95439 1.02875 0.94617 0.85898 0.79239 0.78788 0.79275 1.18757 1.16944 1.22034 1.21178 0.91041 0.92709 1.48931 0.95272 1.20429 0.93419 0.85546 0.93462 0.97190 1.22987 0.96952 0.98593 0.99153 1.22786 0.95739 0.96121 1.02581 1.22959 0.91449 0.97168 0.97360 1.63331 1.28597 1.24316 1.10301 1.22021 0.99402 0.94628 0.90966 1.22679 1.04753 0.97269 0.95017 1.22195 0.78036 0.82919 0.96002 1.92953 1.80638 1.48541 1.97522 1.92967 1.45625 1.96194 1.85742 0.92596 0.92729 0.92442 0.89244 0.90555 0.90788 0.90332 0.92888 0.93400 0.86329 0.90317 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 2 C 0.01 0.54 5.46 84.65 0.46 1.01 16 3 Si 0.94 44.00 24.62 68.60 1.69 45.69 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.25 -10.45 6.47 99.48 0.64 -9.81 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.50 -29.11 9.41 25.60 0.24 -28.87 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C 0.18 8.22 1.88 44.64 0.08 8.30 16 10 H 0.01 0.48 6.65 -2.39 -0.02 0.47 16 11 C -0.14 -5.52 5.39 31.98 0.17 -5.35 16 12 C -0.13 -3.87 6.94 31.77 0.22 -3.65 16 13 C 0.04 1.10 6.19 86.65 0.54 1.64 16 14 N -0.54 -21.11 4.91 -864.98 -4.24 -25.35 16 15 C 0.06 1.91 4.77 86.30 0.41 2.33 16 16 C -0.16 -3.93 5.11 30.59 0.16 -3.78 16 17 C 0.26 5.89 5.29 71.98 0.38 6.27 16 18 F -0.22 -5.15 17.34 44.97 0.78 -4.37 16 19 F -0.22 -6.68 16.93 44.97 0.76 -5.92 16 20 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 21 H 0.05 2.13 5.29 -2.39 -0.01 2.12 16 22 H 0.06 2.49 8.05 -2.38 -0.02 2.47 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 1.75 6.03 -2.39 -0.01 1.74 16 27 H 0.05 2.08 7.81 -2.39 -0.02 2.06 16 28 H 0.05 1.37 8.00 -2.39 -0.02 1.35 16 29 H 0.12 2.25 6.42 -2.39 -0.02 2.23 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.15 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -69.16 254.21 3.00 -66.16 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.05 Total: 6.16 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 2.67 Total: -22.09 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.94 Total: -85.62 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 1.54 Total: -10.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.69 Total: 45.69 kcal Total: -69.16 3.00 -66.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213336665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.081 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds