Wall clock time and date at job start Mon Mar 30 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39900 * 109.46990 * 2 1 4 4 F 1.39904 * 109.47007 * 240.00650 * 2 1 3 5 5 C 1.52996 * 109.47414 * 120.00597 * 2 1 3 6 6 N 1.46900 * 109.47365 * 180.02562 * 5 2 1 7 7 C 1.47844 * 110.99982 * 49.15253 * 6 5 2 8 8 C 1.55380 * 104.83918 * 146.36889 * 7 6 5 9 9 C 1.55142 * 101.43737 * 322.95685 * 8 7 6 10 10 H 1.09002 * 110.70816 * 277.17375 * 9 8 7 11 11 C 1.50703 * 110.70228 * 154.11486 * 9 8 7 12 12 H 1.08004 * 119.99936 * 243.80384 * 11 9 8 13 13 C 1.37878 * 120.00190 * 63.80546 * 11 9 8 14 14 N 1.31511 * 119.99802 * 0.02562 * 13 11 9 15 15 Si 1.86792 * 119.99964 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47159 * 60.00412 * 15 13 11 17 17 H 1.48503 * 109.46903 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47639 * 300.00143 * 15 13 11 19 19 C 1.47443 * 111.00227 * 169.99409 * 6 5 2 20 20 H 1.08991 * 109.46962 * 299.99860 * 1 2 3 21 21 H 1.08999 * 109.47324 * 59.99903 * 1 2 3 22 22 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47168 * 59.99607 * 5 2 1 24 24 H 1.09000 * 109.46543 * 299.99753 * 5 2 1 25 25 H 1.08999 * 110.37744 * 265.19940 * 7 6 5 26 26 H 1.09007 * 110.37325 * 27.42750 * 7 6 5 27 27 H 1.09003 * 111.17446 * 204.90515 * 8 7 6 28 28 H 1.08996 * 111.00619 * 80.94186 * 8 7 6 29 29 H 0.96999 * 120.00041 * 180.02562 * 14 13 11 30 30 H 1.08997 * 109.88254 * 117.33308 * 19 6 5 31 31 H 1.09001 * 110.02167 * 356.22840 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0401 -0.7213 1.2491 6 7 3.5091 -0.7208 1.2494 7 6 4.0384 0.6350 0.9901 8 6 5.3484 0.7166 1.8218 9 6 4.9553 -0.0801 3.0937 10 1 4.4135 0.5552 3.7944 11 6 6.1759 -0.6732 3.7492 12 1 6.2860 -1.7455 3.8155 13 6 7.1520 0.1532 4.2644 14 7 7.0176 1.4590 4.1842 15 14 8.6644 -0.5819 5.0775 16 1 9.3914 -1.4281 4.0974 17 1 9.5549 0.5104 5.5457 18 1 8.2492 -1.4124 6.2365 19 6 4.0374 -1.1916 2.5429 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7490 1.2491 24 1 1.6768 -0.2075 2.1391 25 1 4.2545 0.7617 -0.0707 26 1 3.3273 1.3905 1.3246 27 1 5.5944 1.7494 2.0686 28 1 6.1741 0.2344 1.2986 29 1 7.7044 2.0404 4.5462 30 1 4.6100 -2.1077 2.3981 31 1 3.2171 -1.3731 3.2373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213337157.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:46 Heat of formation + Delta-G solvation = -117.708238 kcal Electronic energy + Delta-G solvation = -15572.671597 eV Core-core repulsion = 12716.847657 eV Total energy + Delta-G solvation = -2855.823940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.96324 -47.92935 -39.67240 -35.37032 -33.71249 -31.44400 -30.01442 -27.42488 -25.68498 -22.89238 -21.85532 -21.38562 -18.71161 -18.44593 -17.67628 -17.24856 -16.56387 -16.17384 -15.70784 -15.06522 -14.78314 -14.36475 -14.17519 -14.02523 -13.72899 -13.42041 -13.20958 -13.03631 -12.94479 -12.88236 -12.63502 -12.42941 -12.16236 -11.57233 -11.46786 -11.12728 -10.89111 -10.49374 -9.24922 -8.14825 -6.25115 1.41850 1.43737 1.51208 2.42429 2.83342 2.96661 3.16413 3.25249 3.50939 3.77014 4.11533 4.27858 4.35131 4.52330 4.53383 4.57984 4.67337 4.87234 4.89077 4.96500 5.03441 5.24277 5.29519 5.55559 5.66043 5.85131 6.02937 6.14622 6.31679 6.83328 7.42506 8.94517 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.069224 B = 0.006881 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.388763 B = 4068.245901 C = 4200.917453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.278 3.722 3 F -0.213 7.213 4 F -0.209 7.209 5 C 0.004 3.996 6 N -0.539 5.539 7 C 0.040 3.960 8 C -0.099 4.099 9 C 0.026 3.974 10 H 0.002 0.998 11 C -0.532 4.532 12 H 0.058 0.942 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.958 3.042 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.060 3.940 20 H 0.102 0.898 21 H 0.088 0.912 22 H 0.110 0.890 23 H 0.123 0.877 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -3.124 -6.196 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.242 3.758 3 F -0.194 7.194 4 F -0.190 7.190 5 C -0.124 4.124 6 N -0.263 5.263 7 C -0.087 4.087 8 C -0.138 4.138 9 C 0.007 3.993 10 H 0.021 0.979 11 C -0.570 4.570 12 H 0.076 0.924 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.783 3.217 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.067 4.067 20 H 0.121 0.879 21 H 0.107 0.893 22 H 0.129 0.871 23 H 0.141 0.859 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.787 -3.290 -6.573 14.749 hybrid contribution 1.007 0.621 0.982 1.538 sum -11.780 -2.669 -5.591 13.310 Atomic orbital electron populations 1.22750 0.87809 1.07135 1.06326 1.21648 0.95707 0.74718 0.83725 1.92941 1.90718 1.39120 1.96663 1.92981 1.91114 1.81087 1.53798 1.23482 0.89571 1.03570 0.95823 1.63696 1.06470 1.23631 1.32547 1.23481 0.96408 0.89611 0.99244 1.22535 0.95165 0.99638 0.96472 1.19787 0.94032 0.92714 0.92768 0.97947 1.21418 1.04936 0.93006 1.37673 0.92399 1.25801 1.01270 0.95206 0.96483 1.70082 1.35478 1.03651 1.46763 0.85608 0.79104 0.77951 0.78989 1.19707 1.21052 1.19284 1.22803 0.97317 0.98817 0.87723 0.87918 0.89266 0.87107 0.85900 0.91149 0.91791 0.92250 0.93456 0.94607 0.93013 0.91628 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.38 71.98 0.68 -2.17 16 2 C 0.28 7.29 2.00 30.59 0.06 7.35 16 3 F -0.21 -6.70 13.13 44.97 0.59 -6.11 16 4 F -0.21 -6.38 16.98 44.97 0.76 -5.61 16 5 C 0.00 0.12 4.53 86.30 0.39 0.51 16 6 N -0.54 -20.58 5.24 -884.56 -4.63 -25.22 16 7 C 0.04 1.66 4.88 86.94 0.42 2.08 16 8 C -0.10 -4.98 5.88 32.15 0.19 -4.79 16 9 C 0.03 1.35 2.81 -10.36 -0.03 1.32 16 10 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 11 C -0.53 -29.75 8.48 25.60 0.22 -29.53 16 12 H 0.06 3.14 7.55 -2.91 -0.02 3.12 16 13 C 0.01 0.64 5.34 84.66 0.45 1.09 16 14 N -0.92 -54.40 12.28 21.45 0.26 -54.14 16 15 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.06 2.53 6.45 86.64 0.56 3.09 16 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 24 H 0.07 1.86 7.96 -2.39 -0.02 1.85 16 25 H 0.06 2.63 7.87 -2.39 -0.02 2.61 16 26 H 0.06 2.40 5.98 -2.38 -0.01 2.38 16 27 H 0.05 2.55 7.63 -2.39 -0.02 2.53 16 28 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.07 2.83 7.65 -2.39 -0.02 2.81 16 31 H 0.06 2.09 7.50 -2.39 -0.02 2.07 16 Total: -1.00 -64.05 257.46 3.06 -61.00 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.11 Total: 5.04 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 2.94 Total: -21.04 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -4.37 Total: -79.36 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 1.35 Total: -11.73 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.05 3.06 -61.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213337157.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.710 kcal (2) G-P(sol) polarization free energy of solvation -64.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds